Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SIGLEC18P-201ENST00000602271 909 ntBASIC14.16□□□□□ -0.14
COL5A1P20908 AC107464.3-201ENST00000609172 737 ntBASIC14.16□□□□□ -0.14
COL5A1P20908 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC14.16□□□□□ -0.14
COL5A1P20908 AC105137.3-201ENST00000617588 984 ntBASIC14.16□□□□□ -0.14
COL5A1P20908 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 CICP6-201ENST00000457191 2729 ntBASIC14.16□□□□□ -0.14
COL5A1P20908 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.16□□□□□ -0.14
COL5A1P20908 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
COL5A1P20908 AC132872.4-202ENST00000622924 2756 ntBASIC14.16□□□□□ -0.14
COL5A1P20908 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC14.16□□□□□ -0.14
COL5A1P20908 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
COL5A1P20908 AC023157.3-201ENST00000619086 2088 ntBASIC14.16□□□□□ -0.14
COL5A1P20908 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 AC073347.1-201ENST00000421633 2643 ntBASIC14.16□□□□□ -0.14
COL5A1P20908 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL5A1P20908 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
COL5A1P20908 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL5A1P20908 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL5A1P20908 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL5A1P20908 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL5A1P20908 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL5A1P20908 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
COL5A1P20908 AL357563.1-201ENST00000404728 395 ntBASIC14.15□□□□□ -0.14
COL5A1P20908 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC14.15□□□□□ -0.14
COL5A1P20908 AL512306.1-201ENST00000432698 848 ntBASIC14.15□□□□□ -0.14
COL5A1P20908 AC012362.1-201ENST00000434906 739 ntBASIC14.15□□□□□ -0.14
COL5A1P20908 ST13P19-201ENST00000442505 1124 ntBASIC14.15□□□□□ -0.14
COL5A1P20908 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL5A1P20908 BUD31-205ENST00000456893 512 ntTSL 5 BASIC14.15□□□□□ -0.14
COL5A1P20908 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC14.15□□□□□ -0.14
COL5A1P20908 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.15□□□□□ -0.14
COL5A1P20908 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC14.15□□□□□ -0.14
COL5A1P20908 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC14.15□□□□□ -0.14
COL5A1P20908 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
COL5A1P20908 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL5A1P20908 MARK2P16-201ENST00000605714 1723 ntBASIC14.15□□□□□ -0.14
COL5A1P20908 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
COL5A1P20908 PAUPAR-201ENST00000630360 2965 ntBASIC14.15□□□□□ -0.14
COL5A1P20908 CYP51A1P3-201ENST00000400072 1428 ntBASIC14.15□□□□□ -0.14
COL5A1P20908 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL5A1P20908 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.15□□□□□ -0.14
COL5A1P20908 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
COL5A1P20908 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.15□□□□□ -0.14
COL5A1P20908 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL5A1P20908 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.15□□□□□ -0.14
COL5A1P20908 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
COL5A1P20908 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL5A1P20908 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL5A1P20908 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL5A1P20908 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
COL5A1P20908 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
COL5A1P20908 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.15□□□□□ -0.14
COL5A1P20908 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL5A1P20908 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL5A1P20908 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL5A1P20908 LYPLA2P1-203ENST00000447689 696 ntBASIC14.15□□□□□ -0.14
COL5A1P20908 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC14.15□□□□□ -0.14
COL5A1P20908 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
COL5A1P20908 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC14.15□□□□□ -0.14
COL5A1P20908 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC14.15□□□□□ -0.14
COL5A1P20908 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.15□□□□□ -0.14
COL5A1P20908 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL5A1P20908 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL5A1P20908 LINC00528-201ENST00000600723 2160 ntBASIC14.15□□□□□ -0.14
COL5A1P20908 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.15□□□□□ -0.14
COL5A1P20908 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.14□□□□□ -0.15
COL5A1P20908 AC007292.2-201ENST00000593524 1812 ntBASIC14.14□□□□□ -0.15
COL5A1P20908 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL5A1P20908 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC14.14□□□□□ -0.15
COL5A1P20908 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 AP003680.1-201ENST00000598970 3660 ntBASIC14.14□□□□□ -0.15
COL5A1P20908 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
COL5A1P20908 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.14□□□□□ -0.15
COL5A1P20908 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 KRT8P28-201ENST00000433288 1390 ntBASIC14.14□□□□□ -0.15
COL5A1P20908 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
COL5A1P20908 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC14.14□□□□□ -0.15
COL5A1P20908 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.14□□□□□ -0.15
COL5A1P20908 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC14.14□□□□□ -0.15
COL5A1P20908 AL592076.1-201ENST00000424448 303 ntBASIC14.14□□□□□ -0.15
COL5A1P20908 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC14.14□□□□□ -0.15
COL5A1P20908 AC092638.2-201ENST00000441105 947 ntBASIC14.14□□□□□ -0.15
COL5A1P20908 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC14.14□□□□□ -0.15
COL5A1P20908 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms