Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.9■□□□□ 0.14
APOEP02649 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.9■□□□□ 0.14
APOEP02649 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 KRT43P-201ENST00000434019 910 ntBASIC15.9■□□□□ 0.14
APOEP02649 AC114812.1-204ENST00000449669 728 ntBASIC15.9■□□□□ 0.14
APOEP02649 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.9■□□□□ 0.14
APOEP02649 USP32P1-208ENST00000506594 1164 ntBASIC15.9■□□□□ 0.14
APOEP02649 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
APOEP02649 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.9■□□□□ 0.14
APOEP02649 SLC25A47P1-201ENST00000531577 414 ntBASIC15.9■□□□□ 0.14
APOEP02649 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.9■□□□□ 0.14
APOEP02649 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.9■□□□□ 0.14
APOEP02649 BTNL10-201ENST00000595971 695 ntBASIC15.9■□□□□ 0.14
APOEP02649 AL022328.1-201ENST00000610050 478 ntBASIC15.9■□□□□ 0.14
APOEP02649 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC15.9■□□□□ 0.14
APOEP02649 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.9■□□□□ 0.14
APOEP02649 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.9■□□□□ 0.14
APOEP02649 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC15.9■□□□□ 0.14
APOEP02649 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
APOEP02649 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.9■□□□□ 0.14
APOEP02649 OR2I1P-209ENST00000641730 5365 ntBASIC15.9■□□□□ 0.14
APOEP02649 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.9■□□□□ 0.14
APOEP02649 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
APOEP02649 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
APOEP02649 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 AC013726.1-201ENST00000563747 2285 ntBASIC15.89■□□□□ 0.13
APOEP02649 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.89■□□□□ 0.13
APOEP02649 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
APOEP02649 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.89■□□□□ 0.13
APOEP02649 LINC00528-201ENST00000600723 2160 ntBASIC15.89■□□□□ 0.13
APOEP02649 OR2I1P-210ENST00000642037 4691 ntBASIC15.89■□□□□ 0.13
APOEP02649 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.89■□□□□ 0.13
APOEP02649 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
APOEP02649 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.89■□□□□ 0.13
APOEP02649 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
APOEP02649 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 KLF2P2-201ENST00000416807 1039 ntBASIC15.89■□□□□ 0.13
APOEP02649 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.89■□□□□ 0.13
APOEP02649 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
APOEP02649 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.89■□□□□ 0.13
APOEP02649 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.89■□□□□ 0.13
APOEP02649 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.89■□□□□ 0.13
APOEP02649 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC15.89■□□□□ 0.13
APOEP02649 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
APOEP02649 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.89■□□□□ 0.13
APOEP02649 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
APOEP02649 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
APOEP02649 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 MYO15B-237ENST00000642007 4893 ntBASIC15.89■□□□□ 0.13
APOEP02649 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.89■□□□□ 0.13
APOEP02649 AC012508.2-201ENST00000567613 1472 ntBASIC15.89■□□□□ 0.13
APOEP02649 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 KRT8P35-201ENST00000483942 1338 ntBASIC15.89■□□□□ 0.13
APOEP02649 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.89■□□□□ 0.13
APOEP02649 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
APOEP02649 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.88■□□□□ 0.13
APOEP02649 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
APOEP02649 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
APOEP02649 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
APOEP02649 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
APOEP02649 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
APOEP02649 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
APOEP02649 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.88■□□□□ 0.13
APOEP02649 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
APOEP02649 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.88■□□□□ 0.13
APOEP02649 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
APOEP02649 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms