Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
SLC28A1O00337 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SLC28A1O00337 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SLC28A1O00337 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.6□□□□□ -0.07
SLC28A1O00337 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SLC28A1O00337 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
SLC28A1O00337 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SLC28A1O00337 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SLC28A1O00337 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SLC28A1O00337 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.6□□□□□ -0.07
SLC28A1O00337 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.6□□□□□ -0.07
SLC28A1O00337 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.6□□□□□ -0.07
SLC28A1O00337 RPL13AP25-201ENST00000484130 612 ntBASIC14.6□□□□□ -0.07
SLC28A1O00337 SPDYE18-201ENST00000510091 1050 ntBASIC14.6□□□□□ -0.07
SLC28A1O00337 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.6□□□□□ -0.07
SLC28A1O00337 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.6□□□□□ -0.07
SLC28A1O00337 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.6□□□□□ -0.07
SLC28A1O00337 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.6□□□□□ -0.07
SLC28A1O00337 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.6□□□□□ -0.07
SLC28A1O00337 AL049840.4-201ENST00000602422 811 ntBASIC14.6□□□□□ -0.07
SLC28A1O00337 AC004840.1-201ENST00000636359 365 ntBASIC14.6□□□□□ -0.07
SLC28A1O00337 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
SLC28A1O00337 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SLC28A1O00337 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
SLC28A1O00337 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.6□□□□□ -0.07
SLC28A1O00337 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SLC28A1O00337 AC139749.1-202ENST00000617529 3139 ntBASIC14.6□□□□□ -0.07
SLC28A1O00337 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
SLC28A1O00337 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.6□□□□□ -0.07
SLC28A1O00337 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
SLC28A1O00337 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SLC28A1O00337 AC022144.1-201ENST00000602255 1580 ntBASIC14.6□□□□□ -0.07
SLC28A1O00337 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SLC28A1O00337 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
SLC28A1O00337 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
SLC28A1O00337 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
SLC28A1O00337 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.59□□□□□ -0.07
SLC28A1O00337 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.59□□□□□ -0.07
SLC28A1O00337 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
SLC28A1O00337 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
SLC28A1O00337 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
SLC28A1O00337 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.59□□□□□ -0.07
SLC28A1O00337 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.59□□□□□ -0.07
SLC28A1O00337 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.59□□□□□ -0.07
SLC28A1O00337 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.59□□□□□ -0.07
SLC28A1O00337 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.59□□□□□ -0.07
SLC28A1O00337 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.59□□□□□ -0.07
SLC28A1O00337 AC093813.1-201ENST00000605066 256 ntBASIC14.59□□□□□ -0.07
SLC28A1O00337 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.59□□□□□ -0.07
SLC28A1O00337 AC008738.7-201ENST00000609744 511 ntBASIC14.59□□□□□ -0.07
SLC28A1O00337 AL390754.1-201ENST00000619088 582 ntBASIC14.59□□□□□ -0.07
SLC28A1O00337 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.59□□□□□ -0.07
SLC28A1O00337 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
SLC28A1O00337 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
SLC28A1O00337 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
SLC28A1O00337 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.59□□□□□ -0.07
SLC28A1O00337 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
SLC28A1O00337 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.59□□□□□ -0.07
SLC28A1O00337 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SLC28A1O00337 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
SLC28A1O00337 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.07
SLC28A1O00337 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
SLC28A1O00337 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.58□□□□□ -0.07
SLC28A1O00337 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.07
SLC28A1O00337 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SLC28A1O00337 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SLC28A1O00337 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SLC28A1O00337 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SLC28A1O00337 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.58□□□□□ -0.08
SLC28A1O00337 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.58□□□□□ -0.08
SLC28A1O00337 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.58□□□□□ -0.08
SLC28A1O00337 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.58□□□□□ -0.08
SLC28A1O00337 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SLC28A1O00337 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SLC28A1O00337 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
SLC28A1O00337 AC055876.3-201ENST00000431496 288 ntBASIC14.58□□□□□ -0.08
SLC28A1O00337 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.58□□□□□ -0.08
SLC28A1O00337 RN7SL399P-201ENST00000471648 279 ntBASIC14.58□□□□□ -0.08
SLC28A1O00337 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms