Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 AC007292.2-201ENST00000593524 1812 ntBASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 AC240504.1-201ENST00000395709 845 ntBASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 VN1R53P-201ENST00000429536 957 ntBASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 AC133552.4-201ENST00000576103 676 ntBASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 AC007431.3-201ENST00000623221 587 ntBASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 BX539320.1-201ENST00000623759 877 ntBASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS9D1Q9Y2B5 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 SPTLC1P1-201ENST00000447199 261 ntBASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 AC253576.1-201ENST00000511645 1156 ntBASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 AC120045.2-201ENST00000567334 178 ntBASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 HFE2-206ENST00000634927 506 ntTSL 4 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 ABR-205ENST00000544583 5595 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 AL158070.2-201ENST00000623713 1621 ntBASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS9D1Q9Y2B5 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms