Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AP001582.1-201ENST00000525856 295 ntBASIC15.8■□□□□ 0.12
CDH6P55285 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
CDH6P55285 AC124283.3-201ENST00000570869 594 ntBASIC15.8■□□□□ 0.12
CDH6P55285 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
CDH6P55285 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CDH6P55285 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.8■□□□□ 0.12
CDH6P55285 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 AC018442.1-201ENST00000421439 2061 ntBASIC15.8■□□□□ 0.12
CDH6P55285 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CDH6P55285 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.8■□□□□ 0.12
CDH6P55285 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
CDH6P55285 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH6P55285 AL365209.1-201ENST00000624418 6473 ntBASIC15.79■□□□□ 0.12
CDH6P55285 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
CDH6P55285 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDH6P55285 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CDH6P55285 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
CDH6P55285 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH6P55285 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH6P55285 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDH6P55285 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH6P55285 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.79■□□□□ 0.12
CDH6P55285 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH6P55285 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH6P55285 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CDH6P55285 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.79■□□□□ 0.12
CDH6P55285 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH6P55285 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
CDH6P55285 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CDH6P55285 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
CDH6P55285 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.79■□□□□ 0.12
CDH6P55285 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.79■□□□□ 0.12
CDH6P55285 GALT-202ENST00000450095 1280 ntTSL 2 BASIC15.79■□□□□ 0.12
CDH6P55285 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.79■□□□□ 0.12
CDH6P55285 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDH6P55285 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.79■□□□□ 0.12
CDH6P55285 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.79■□□□□ 0.12
CDH6P55285 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CDH6P55285 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.79■□□□□ 0.12
CDH6P55285 AC092364.2-202ENST00000597012 1073 ntBASIC15.79■□□□□ 0.12
CDH6P55285 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.79■□□□□ 0.12
CDH6P55285 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH6P55285 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.79■□□□□ 0.12
CDH6P55285 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.79■□□□□ 0.12
CDH6P55285 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH6P55285 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CDH6P55285 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH6P55285 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDH6P55285 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
CDH6P55285 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDH6P55285 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.78■□□□□ 0.12
CDH6P55285 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.78■□□□□ 0.12
CDH6P55285 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.78■□□□□ 0.12
CDH6P55285 AL009178.2-201ENST00000597278 2719 ntBASIC15.78■□□□□ 0.12
CDH6P55285 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
CDH6P55285 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 SOCS2P1-201ENST00000417727 557 ntBASIC15.78■□□□□ 0.12
CDH6P55285 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.78■□□□□ 0.12
CDH6P55285 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.78■□□□□ 0.12
CDH6P55285 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.78■□□□□ 0.12
CDH6P55285 API5-211ENST00000534695 560 ntTSL 5 BASIC15.78■□□□□ 0.12
CDH6P55285 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.78■□□□□ 0.12
CDH6P55285 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.78■□□□□ 0.12
CDH6P55285 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.78■□□□□ 0.12
CDH6P55285 GREM1-201ENST00000560677 623 ntTSL 4 BASIC15.78■□□□□ 0.12
CDH6P55285 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.78■□□□□ 0.12
CDH6P55285 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.78■□□□□ 0.12
CDH6P55285 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.78■□□□□ 0.12
CDH6P55285 TMEM261P1-201ENST00000604899 340 ntBASIC15.78■□□□□ 0.12
CDH6P55285 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.78■□□□□ 0.12
CDH6P55285 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms