Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN9P43378 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN9P43378 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN9P43378 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN9P43378 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
PTPN9P43378 SLC25A47P1-201ENST00000531577 414 ntBASIC15.71■□□□□ 0.11
PTPN9P43378 AC005225.4-201ENST00000557330 545 ntBASIC15.71■□□□□ 0.11
PTPN9P43378 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN9P43378 AC233724.13-201ENST00000598383 410 ntBASIC15.71■□□□□ 0.11
PTPN9P43378 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.71■□□□□ 0.11
PTPN9P43378 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN9P43378 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN9P43378 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN9P43378 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
PTPN9P43378 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN9P43378 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN9P43378 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN9P43378 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN9P43378 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.71■□□□□ 0.11
PTPN9P43378 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN9P43378 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN9P43378 FAM45BP-202ENST00000592932 1624 ntBASIC15.71■□□□□ 0.11
PTPN9P43378 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC15.71■□□□□ 0.1
PTPN9P43378 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
PTPN9P43378 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
PTPN9P43378 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 MTHFR-210ENST00000641407 2387 ntBASIC15.7■□□□□ 0.1
PTPN9P43378 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
PTPN9P43378 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
PTPN9P43378 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
PTPN9P43378 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN9P43378 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 AC092933.1-201ENST00000393644 945 ntBASIC15.7■□□□□ 0.1
PTPN9P43378 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.7■□□□□ 0.1
PTPN9P43378 POM121L8P-201ENST00000417732 1281 ntBASIC15.7■□□□□ 0.1
PTPN9P43378 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.7■□□□□ 0.1
PTPN9P43378 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC15.7■□□□□ 0.1
PTPN9P43378 TMEM14DP-201ENST00000422205 345 ntBASIC15.7■□□□□ 0.1
PTPN9P43378 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.7■□□□□ 0.1
PTPN9P43378 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN9P43378 POM121L9P-203ENST00000441984 1285 ntBASIC15.7■□□□□ 0.1
PTPN9P43378 FO681548.1-201ENST00000455617 1132 ntBASIC15.7■□□□□ 0.1
PTPN9P43378 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN9P43378 CR383656.12-201ENST00000549567 513 ntBASIC15.7■□□□□ 0.1
PTPN9P43378 AC025279.2-201ENST00000569730 653 ntBASIC15.7■□□□□ 0.1
PTPN9P43378 ENPP7P14-201ENST00000621765 1040 ntBASIC15.7■□□□□ 0.1
PTPN9P43378 AC132938.4-201ENST00000623835 848 ntBASIC15.7■□□□□ 0.1
PTPN9P43378 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.7■□□□□ 0.1
PTPN9P43378 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
PTPN9P43378 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.7■□□□□ 0.1
PTPN9P43378 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
PTPN9P43378 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN9P43378 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.69■□□□□ 0.1
PTPN9P43378 AC232323.1-201ENST00000540724 2099 ntBASIC15.69■□□□□ 0.1
PTPN9P43378 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
PTPN9P43378 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.69■□□□□ 0.1
PTPN9P43378 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.69■□□□□ 0.1
PTPN9P43378 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
PTPN9P43378 AC007969.1-201ENST00000433675 447 ntBASIC15.69■□□□□ 0.1
PTPN9P43378 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.69■□□□□ 0.1
PTPN9P43378 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.69■□□□□ 0.1
PTPN9P43378 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.69■□□□□ 0.1
PTPN9P43378 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PTPN9P43378 BTNL10-201ENST00000595971 695 ntBASIC15.69■□□□□ 0.1
PTPN9P43378 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN9P43378 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PTPN9P43378 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.69■□□□□ 0.1
PTPN9P43378 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.69■□□□□ 0.1
PTPN9P43378 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms