Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.88□□□□□ -0.03
SHMT2P34897 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.88□□□□□ -0.03
SHMT2P34897 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.88□□□□□ -0.03
SHMT2P34897 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.88□□□□□ -0.03
SHMT2P34897 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.88□□□□□ -0.03
SHMT2P34897 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
SHMT2P34897 AC008735.3-201ENST00000596646 500 ntBASIC14.88□□□□□ -0.03
SHMT2P34897 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.88□□□□□ -0.03
SHMT2P34897 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.88□□□□□ -0.03
SHMT2P34897 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.88□□□□□ -0.03
SHMT2P34897 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.88□□□□□ -0.03
SHMT2P34897 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.88□□□□□ -0.03
SHMT2P34897 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHMT2P34897 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
SHMT2P34897 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.87□□□□□ -0.03
SHMT2P34897 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.87□□□□□ -0.03
SHMT2P34897 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
SHMT2P34897 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
SHMT2P34897 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.87□□□□□ -0.03
SHMT2P34897 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
SHMT2P34897 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
SHMT2P34897 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
SHMT2P34897 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.87□□□□□ -0.03
SHMT2P34897 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.87□□□□□ -0.03
SHMT2P34897 AC012441.1-201ENST00000446669 685 ntBASIC14.87□□□□□ -0.03
SHMT2P34897 AL355864.2-201ENST00000447420 863 ntBASIC14.87□□□□□ -0.03
SHMT2P34897 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
SHMT2P34897 AC022137.2-201ENST00000503482 481 ntBASIC14.87□□□□□ -0.03
SHMT2P34897 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.87□□□□□ -0.03
SHMT2P34897 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.87□□□□□ -0.03
SHMT2P34897 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.87□□□□□ -0.03
SHMT2P34897 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.87□□□□□ -0.03
SHMT2P34897 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.87□□□□□ -0.03
SHMT2P34897 AC233724.13-201ENST00000598383 410 ntBASIC14.87□□□□□ -0.03
SHMT2P34897 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.87□□□□□ -0.03
SHMT2P34897 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.87□□□□□ -0.03
SHMT2P34897 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
SHMT2P34897 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.87□□□□□ -0.03
SHMT2P34897 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.87□□□□□ -0.03
SHMT2P34897 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.87□□□□□ -0.03
SHMT2P34897 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
SHMT2P34897 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 AC126365.1-201ENST00000578585 1514 ntBASIC14.87□□□□□ -0.03
SHMT2P34897 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHMT2P34897 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHMT2P34897 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.86□□□□□ -0.03
SHMT2P34897 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.86□□□□□ -0.03
SHMT2P34897 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHMT2P34897 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHMT2P34897 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHMT2P34897 CICP11-201ENST00000434745 2827 ntBASIC14.86□□□□□ -0.03
SHMT2P34897 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHMT2P34897 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.86□□□□□ -0.03
SHMT2P34897 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHMT2P34897 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHMT2P34897 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHMT2P34897 TMEM14DP-201ENST00000422205 345 ntBASIC14.86□□□□□ -0.03
SHMT2P34897 KRT43P-201ENST00000434019 910 ntBASIC14.86□□□□□ -0.03
SHMT2P34897 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.86□□□□□ -0.03
SHMT2P34897 AC114812.1-204ENST00000449669 728 ntBASIC14.86□□□□□ -0.03
SHMT2P34897 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.86□□□□□ -0.03
SHMT2P34897 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHMT2P34897 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms