Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.13■□□□□ 0.01
MSH3P20585 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.13■□□□□ 0.01
MSH3P20585 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.13■□□□□ 0.01
MSH3P20585 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
MSH3P20585 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.12■□□□□ 0.01
MSH3P20585 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.12■□□□□ 0.01
MSH3P20585 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
MSH3P20585 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
MSH3P20585 SBF1P1-201ENST00000444527 5631 ntBASIC15.12■□□□□ 0.01
MSH3P20585 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
MSH3P20585 AL009178.2-201ENST00000597278 2719 ntBASIC15.12■□□□□ 0.01
MSH3P20585 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.12■□□□□ 0.01
MSH3P20585 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.12■□□□□ 0.01
MSH3P20585 RNU1-114P-201ENST00000365297 166 ntBASIC15.12■□□□□ 0.01
MSH3P20585 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.12■□□□□ 0.01
MSH3P20585 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.12■□□□□ 0.01
MSH3P20585 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.12■□□□□ 0.01
MSH3P20585 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.12■□□□□ 0.01
MSH3P20585 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.12■□□□□ 0.01
MSH3P20585 CR383656.12-201ENST00000549567 513 ntBASIC15.12■□□□□ 0.01
MSH3P20585 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.12■□□□□ 0.01
MSH3P20585 MIR5189-201ENST00000577370 114 ntBASIC15.12■□□□□ 0.01
MSH3P20585 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.12■□□□□ 0.01
MSH3P20585 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.12■□□□□ 0.01
MSH3P20585 AC015936.2-201ENST00000593177 259 ntBASIC15.12■□□□□ 0.01
MSH3P20585 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.12■□□□□ 0.01
MSH3P20585 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
MSH3P20585 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.12■□□□□ 0.01
MSH3P20585 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.12■□□□□ 0.01
MSH3P20585 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MSH3P20585 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 ZBED1P1-201ENST00000502364 1930 ntBASIC15.11■□□□□ 0.01
MSH3P20585 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.11■□□□□ 0.01
MSH3P20585 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.11■□□□□ 0.01
MSH3P20585 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 AP000845.1-201ENST00000581677 2131 ntBASIC15.11■□□□□ 0.01
MSH3P20585 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.11■□□□□ 0.01
MSH3P20585 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.11■□□□□ 0.01
MSH3P20585 AL359258.3-201ENST00000622910 2331 ntBASIC15.11■□□□□ 0.01
MSH3P20585 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
MSH3P20585 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.11■□□□□ 0.01
MSH3P20585 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.11■□□□□ 0.01
MSH3P20585 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.11■□□□□ 0.01
MSH3P20585 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.11■□□□□ 0.01
MSH3P20585 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
MSH3P20585 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC15.11■□□□□ 0.01
MSH3P20585 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
MSH3P20585 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
MSH3P20585 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
MSH3P20585 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.11■□□□□ 0.01
MSH3P20585 AL139094.1-201ENST00000405549 1188 ntBASIC15.11■□□□□ 0.01
MSH3P20585 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.11■□□□□ 0.01
MSH3P20585 KLF2P2-201ENST00000416807 1039 ntBASIC15.11■□□□□ 0.01
MSH3P20585 AC005034.1-201ENST00000426657 489 ntBASIC15.11■□□□□ 0.01
MSH3P20585 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.11■□□□□ 0.01
MSH3P20585 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.11■□□□□ 0.01
MSH3P20585 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.11■□□□□ 0.01
MSH3P20585 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.11■□□□□ 0.01
MSH3P20585 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.11■□□□□ 0.01
MSH3P20585 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 RBM7-207ENST00000544582 692 ntTSL 3 BASIC15.11■□□□□ 0.01
MSH3P20585 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.11■□□□□ 0.01
MSH3P20585 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.11■□□□□ 0.01
MSH3P20585 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.11■□□□□ 0.01
MSH3P20585 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.11■□□□□ 0.01
MSH3P20585 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
MSH3P20585 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms