Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC15.23■□□□□ 0.03
VCANP13611 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VCANP13611 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
VCANP13611 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.23■□□□□ 0.03
VCANP13611 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VCANP13611 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VCANP13611 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VCANP13611 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC15.23■□□□□ 0.03
VCANP13611 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.23■□□□□ 0.03
VCANP13611 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VCANP13611 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.23■□□□□ 0.03
VCANP13611 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC15.23■□□□□ 0.03
VCANP13611 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
VCANP13611 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
VCANP13611 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VCANP13611 AL512599.1-201ENST00000430724 685 ntBASIC15.23■□□□□ 0.03
VCANP13611 AC022447.5-201ENST00000504817 392 ntBASIC15.23■□□□□ 0.03
VCANP13611 AC087072.1-201ENST00000603727 421 ntBASIC15.23■□□□□ 0.03
VCANP13611 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC15.23■□□□□ 0.03
VCANP13611 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC15.23■□□□□ 0.03
VCANP13611 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC15.23■□□□□ 0.03
VCANP13611 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC15.23■□□□□ 0.03
VCANP13611 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VCANP13611 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VCANP13611 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
VCANP13611 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VCANP13611 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.23■□□□□ 0.03
VCANP13611 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC15.22■□□□□ 0.03
VCANP13611 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC15.22■□□□□ 0.03
VCANP13611 RN7SL288P-201ENST00000490496 291 ntBASIC15.22■□□□□ 0.03
VCANP13611 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC15.22■□□□□ 0.03
VCANP13611 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC15.22■□□□□ 0.03
VCANP13611 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC15.22■□□□□ 0.03
VCANP13611 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VCANP13611 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.22■□□□□ 0.03
VCANP13611 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
VCANP13611 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.22■□□□□ 0.03
VCANP13611 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
VCANP13611 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.22■□□□□ 0.03
VCANP13611 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
VCANP13611 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VCANP13611 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 AC104961.1-201ENST00000427605 771 ntBASIC15.22■□□□□ 0.03
VCANP13611 RNASEH2CP1-201ENST00000454281 502 ntBASIC15.22■□□□□ 0.03
VCANP13611 RRNAD1-204ENST00000476229 1096 ntTSL 5 BASIC15.22■□□□□ 0.03
VCANP13611 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.22■□□□□ 0.03
VCANP13611 RN7SL357P-201ENST00000581065 298 ntBASIC15.22■□□□□ 0.03
VCANP13611 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.22■□□□□ 0.03
VCANP13611 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 AP000322.3-201ENST00000608665 388 ntBASIC15.22■□□□□ 0.03
VCANP13611 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.22■□□□□ 0.03
VCANP13611 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.22■□□□□ 0.03
VCANP13611 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC15.22■□□□□ 0.03
VCANP13611 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC15.22■□□□□ 0.03
VCANP13611 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC15.22■□□□□ 0.03
VCANP13611 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
VCANP13611 AC131235.2-201ENST00000445553 1057 ntBASIC15.22■□□□□ 0.03
VCANP13611 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 ALG1L3P-201ENST00000503331 765 ntBASIC15.22■□□□□ 0.03
VCANP13611 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC15.22■□□□□ 0.03
VCANP13611 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.22■□□□□ 0.03
VCANP13611 AC005921.2-201ENST00000574246 670 ntTSL 5 BASIC15.22■□□□□ 0.03
VCANP13611 HNRNPA1P16-201ENST00000575692 955 ntBASIC15.22■□□□□ 0.03
VCANP13611 MIR4254-201ENST00000581063 76 ntBASIC15.22■□□□□ 0.03
VCANP13611 APOC1-209ENST00000592885 562 ntTSL 3 BASIC15.22■□□□□ 0.03
VCANP13611 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VCANP13611 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
VCANP13611 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VCANP13611 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
VCANP13611 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC15.22■□□□□ 0.03
VCANP13611 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC15.21■□□□□ 0.03
VCANP13611 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VCANP13611 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
VCANP13611 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC15.21■□□□□ 0.03
VCANP13611 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC15.21■□□□□ 0.03
VCANP13611 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VCANP13611 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
VCANP13611 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC15.21■□□□□ 0.03
VCANP13611 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC15.21■□□□□ 0.03
VCANP13611 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC15.21■□□□□ 0.03
VCANP13611 AC226150.1-201ENST00000544259 466 ntBASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms