Protein–RNA interactions for Protein: P11387

TOP1, DNA topoisomerase 1, humanhuman

Known RBP Predictions only

Length 765 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP1P11387 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
TOP1P11387 AC023024.2-201ENST00000623561 1993 ntBASIC17.81■□□□□ 0.44
TOP1P11387 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
TOP1P11387 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
TOP1P11387 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TOP1P11387 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TOP1P11387 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
TOP1P11387 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TOP1P11387 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TOP1P11387 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TOP1P11387 AC006001.1-201ENST00000325130 474 ntBASIC17.81■□□□□ 0.44
TOP1P11387 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TOP1P11387 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC17.81■□□□□ 0.44
TOP1P11387 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.81■□□□□ 0.44
TOP1P11387 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC17.81■□□□□ 0.44
TOP1P11387 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC17.81■□□□□ 0.44
TOP1P11387 CSF2RBP1-201ENST00000447905 391 ntBASIC17.81■□□□□ 0.44
TOP1P11387 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC17.81■□□□□ 0.44
TOP1P11387 RNA5SP486-201ENST00000515961 83 ntBASIC17.81■□□□□ 0.44
TOP1P11387 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
TOP1P11387 AC079316.1-201ENST00000548397 411 ntBASIC17.81■□□□□ 0.44
TOP1P11387 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC17.81■□□□□ 0.44
TOP1P11387 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.81■□□□□ 0.44
TOP1P11387 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC17.81■□□□□ 0.44
TOP1P11387 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.81■□□□□ 0.44
TOP1P11387 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC17.81■□□□□ 0.44
TOP1P11387 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TOP1P11387 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TOP1P11387 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC17.81■□□□□ 0.44
TOP1P11387 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
TOP1P11387 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC17.81■□□□□ 0.44
TOP1P11387 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
TOP1P11387 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
TOP1P11387 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TOP1P11387 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
TOP1P11387 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
TOP1P11387 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TOP1P11387 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TOP1P11387 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TOP1P11387 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TOP1P11387 AL157414.3-201ENST00000624276 1954 ntBASIC17.8■□□□□ 0.44
TOP1P11387 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.8■□□□□ 0.44
TOP1P11387 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 FAM45BP-202ENST00000592932 1624 ntBASIC17.8■□□□□ 0.44
TOP1P11387 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TOP1P11387 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.8■□□□□ 0.44
TOP1P11387 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
TOP1P11387 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.8■□□□□ 0.44
TOP1P11387 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.8■□□□□ 0.44
TOP1P11387 HLA-V-201ENST00000429037 534 ntBASIC17.8■□□□□ 0.44
TOP1P11387 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.8■□□□□ 0.44
TOP1P11387 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.8■□□□□ 0.44
TOP1P11387 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC17.8■□□□□ 0.44
TOP1P11387 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.8■□□□□ 0.44
TOP1P11387 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.8■□□□□ 0.44
TOP1P11387 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.8■□□□□ 0.44
TOP1P11387 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
TOP1P11387 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.8■□□□□ 0.44
TOP1P11387 AC078819.1-201ENST00000547454 765 ntBASIC17.8■□□□□ 0.44
TOP1P11387 AC012085.1-201ENST00000548270 765 ntBASIC17.8■□□□□ 0.44
TOP1P11387 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC17.8■□□□□ 0.44
TOP1P11387 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC17.8■□□□□ 0.44
TOP1P11387 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.8■□□□□ 0.44
TOP1P11387 DUX4L47-201ENST00000566374 394 ntBASIC17.8■□□□□ 0.44
TOP1P11387 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.8■□□□□ 0.44
TOP1P11387 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TOP1P11387 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TOP1P11387 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TOP1P11387 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.8■□□□□ 0.44
TOP1P11387 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC17.8■□□□□ 0.44
TOP1P11387 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TOP1P11387 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC17.8■□□□□ 0.44
TOP1P11387 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.8■□□□□ 0.44
TOP1P11387 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.8■□□□□ 0.44
TOP1P11387 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TOP1P11387 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC17.79■□□□□ 0.44
TOP1P11387 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TOP1P11387 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TOP1P11387 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TOP1P11387 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TOP1P11387 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.79■□□□□ 0.44
TOP1P11387 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms