Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 GOLGA2P7-209ENST00000560408 745 ntBASIC22.08■■□□□ 1.13
RAPGEF3O95398 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
RAPGEF3O95398 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC22.08■■□□□ 1.13
RAPGEF3O95398 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC22.08■■□□□ 1.13
RAPGEF3O95398 AC021016.3-201ENST00000608367 477 ntBASIC22.08■■□□□ 1.13
RAPGEF3O95398 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
RAPGEF3O95398 HELLS-212ENST00000630929 400 ntTSL 5 BASIC22.08■■□□□ 1.13
RAPGEF3O95398 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC22.08■■□□□ 1.13
RAPGEF3O95398 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC22.08■■□□□ 1.13
RAPGEF3O95398 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
RAPGEF3O95398 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC22.08■■□□□ 1.12
RAPGEF3O95398 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC22.08■■□□□ 1.12
RAPGEF3O95398 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC22.08■■□□□ 1.12
RAPGEF3O95398 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
RAPGEF3O95398 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.12
RAPGEF3O95398 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
RAPGEF3O95398 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC22.08■■□□□ 1.12
RAPGEF3O95398 AL513523.2-202ENST00000427283 2040 ntBASIC22.07■■□□□ 1.12
RAPGEF3O95398 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RAPGEF3O95398 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RAPGEF3O95398 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC22.07■■□□□ 1.12
RAPGEF3O95398 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RAPGEF3O95398 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC22.07■■□□□ 1.12
RAPGEF3O95398 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
RAPGEF3O95398 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RAPGEF3O95398 PTGER4P2-201ENST00000328411 252 ntBASIC22.07■■□□□ 1.12
RAPGEF3O95398 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC22.07■■□□□ 1.12
RAPGEF3O95398 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC22.07■■□□□ 1.12
RAPGEF3O95398 PTGER4P3-201ENST00000458150 252 ntBASIC22.07■■□□□ 1.12
RAPGEF3O95398 RN7SL23P-201ENST00000484055 275 ntBASIC22.07■■□□□ 1.12
RAPGEF3O95398 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC22.07■■□□□ 1.12
RAPGEF3O95398 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC22.07■■□□□ 1.12
RAPGEF3O95398 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
RAPGEF3O95398 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RAPGEF3O95398 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC22.07■■□□□ 1.12
RAPGEF3O95398 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC22.07■■□□□ 1.12
RAPGEF3O95398 MIR6746-201ENST00000620971 63 ntBASIC22.07■■□□□ 1.12
RAPGEF3O95398 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
RAPGEF3O95398 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
RAPGEF3O95398 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RAPGEF3O95398 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RAPGEF3O95398 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RAPGEF3O95398 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RAPGEF3O95398 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RAPGEF3O95398 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RAPGEF3O95398 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC22.07■■□□□ 1.12
RAPGEF3O95398 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC22.06■■□□□ 1.12
RAPGEF3O95398 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RAPGEF3O95398 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RAPGEF3O95398 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RAPGEF3O95398 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RAPGEF3O95398 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC22.06■■□□□ 1.12
RAPGEF3O95398 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
RAPGEF3O95398 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC22.06■■□□□ 1.12
RAPGEF3O95398 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
RAPGEF3O95398 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RAPGEF3O95398 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC22.06■■□□□ 1.12
RAPGEF3O95398 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC22.06■■□□□ 1.12
RAPGEF3O95398 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC22.06■■□□□ 1.12
RAPGEF3O95398 AC018638.5-201ENST00000450885 754 ntBASIC22.06■■□□□ 1.12
RAPGEF3O95398 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC22.06■■□□□ 1.12
RAPGEF3O95398 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC22.06■■□□□ 1.12
RAPGEF3O95398 AC010976.2-201ENST00000609697 852 ntBASIC22.06■■□□□ 1.12
RAPGEF3O95398 AC233280.19-201ENST00000633223 136 ntBASIC22.06■■□□□ 1.12
RAPGEF3O95398 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
RAPGEF3O95398 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC22.06■■□□□ 1.12
RAPGEF3O95398 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC22.06■■□□□ 1.12
RAPGEF3O95398 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RAPGEF3O95398 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
RAPGEF3O95398 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC22.06■■□□□ 1.12
RAPGEF3O95398 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RAPGEF3O95398 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC22.06■■□□□ 1.12
RAPGEF3O95398 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RAPGEF3O95398 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
RAPGEF3O95398 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
RAPGEF3O95398 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
RAPGEF3O95398 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RAPGEF3O95398 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RAPGEF3O95398 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RAPGEF3O95398 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC22.05■■□□□ 1.12
RAPGEF3O95398 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC22.05■■□□□ 1.12
RAPGEF3O95398 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RAPGEF3O95398 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC22.05■■□□□ 1.12
RAPGEF3O95398 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
RAPGEF3O95398 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RAPGEF3O95398 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RAPGEF3O95398 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC22.05■■□□□ 1.12
RAPGEF3O95398 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
RAPGEF3O95398 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC22.05■■□□□ 1.12
RAPGEF3O95398 AC004686.1-201ENST00000605113 538 ntBASIC22.05■■□□□ 1.12
RAPGEF3O95398 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
RAPGEF3O95398 TP53-221ENST00000615910 1149 ntTSL 5 BASIC22.05■■□□□ 1.12
RAPGEF3O95398 MVK-217ENST00000639206 367 ntTSL 5 BASIC22.05■■□□□ 1.12
RAPGEF3O95398 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RAPGEF3O95398 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC22.05■■□□□ 1.12
RAPGEF3O95398 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC22.05■■□□□ 1.12
RAPGEF3O95398 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RAPGEF3O95398 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC22.05■■□□□ 1.12
RAPGEF3O95398 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RAPGEF3O95398 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC22.04■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 192.1 ms