Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SHOX2O60902 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC15.17■□□□□ 0.02
SHOX2O60902 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHOX2O60902 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.17■□□□□ 0.02
SHOX2O60902 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHOX2O60902 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SHOX2O60902 AL139010.1-201ENST00000454878 894 ntBASIC15.17■□□□□ 0.02
SHOX2O60902 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.17■□□□□ 0.02
SHOX2O60902 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC15.17■□□□□ 0.02
SHOX2O60902 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC15.17■□□□□ 0.02
SHOX2O60902 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.17■□□□□ 0.02
SHOX2O60902 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.17■□□□□ 0.02
SHOX2O60902 AC008735.5-201ENST00000623544 497 ntBASIC15.17■□□□□ 0.02
SHOX2O60902 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHOX2O60902 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
SHOX2O60902 VENTXP1-201ENST00000569334 2716 ntBASIC15.17■□□□□ 0.02
SHOX2O60902 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC15.17■□□□□ 0.02
SHOX2O60902 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SHOX2O60902 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHOX2O60902 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHOX2O60902 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
SHOX2O60902 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.17■□□□□ 0.02
SHOX2O60902 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC15.17■□□□□ 0.02
SHOX2O60902 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
SHOX2O60902 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHOX2O60902 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
SHOX2O60902 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SHOX2O60902 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 AL022323.5-201ENST00000624101 2059 ntBASIC15.16■□□□□ 0.02
SHOX2O60902 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC15.16■□□□□ 0.02
SHOX2O60902 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC15.16■□□□□ 0.02
SHOX2O60902 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.16■□□□□ 0.02
SHOX2O60902 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC15.16■□□□□ 0.02
SHOX2O60902 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC15.16■□□□□ 0.02
SHOX2O60902 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 CLK3P2-201ENST00000427566 1453 ntBASIC15.16■□□□□ 0.02
SHOX2O60902 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.16■□□□□ 0.02
SHOX2O60902 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
SHOX2O60902 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.16■□□□□ 0.02
SHOX2O60902 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SHOX2O60902 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
SHOX2O60902 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
SHOX2O60902 AC108073.2-201ENST00000464002 357 ntBASIC15.16■□□□□ 0.02
SHOX2O60902 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SHOX2O60902 SDHD-206ENST00000528182 754 ntTSL 3 BASIC15.16■□□□□ 0.02
SHOX2O60902 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SHOX2O60902 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SHOX2O60902 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SHOX2O60902 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC15.16■□□□□ 0.02
SHOX2O60902 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.16■□□□□ 0.02
SHOX2O60902 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SHOX2O60902 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SHOX2O60902 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SHOX2O60902 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC15.15■□□□□ 0.02
SHOX2O60902 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHOX2O60902 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC15.15■□□□□ 0.02
SHOX2O60902 MKRN5P-201ENST00000445263 1467 ntBASIC15.15■□□□□ 0.02
SHOX2O60902 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
SHOX2O60902 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHOX2O60902 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHOX2O60902 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SHOX2O60902 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHOX2O60902 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHOX2O60902 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
SHOX2O60902 AC097376.2-205ENST00000610159 5334 ntBASIC15.15■□□□□ 0.02
SHOX2O60902 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHOX2O60902 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
SHOX2O60902 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHOX2O60902 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SHOX2O60902 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC15.15■□□□□ 0.02
SHOX2O60902 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
SHOX2O60902 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.15■□□□□ 0.02
SHOX2O60902 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC15.15■□□□□ 0.02
SHOX2O60902 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.15■□□□□ 0.02
SHOX2O60902 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms