Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.93■□□□□ 0.3
MSH4O15457 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
MSH4O15457 AC006058.4-201ENST00000624016 1670 ntBASIC16.93■□□□□ 0.3
MSH4O15457 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.93■□□□□ 0.3
MSH4O15457 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC16.93■□□□□ 0.3
MSH4O15457 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.93■□□□□ 0.3
MSH4O15457 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
MSH4O15457 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
MSH4O15457 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
MSH4O15457 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
MSH4O15457 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC16.92■□□□□ 0.3
MSH4O15457 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
MSH4O15457 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
MSH4O15457 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC16.92■□□□□ 0.3
MSH4O15457 AC004945.1-201ENST00000416738 983 ntBASIC16.92■□□□□ 0.3
MSH4O15457 AC007969.1-201ENST00000433675 447 ntBASIC16.92■□□□□ 0.3
MSH4O15457 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC16.92■□□□□ 0.3
MSH4O15457 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.92■□□□□ 0.3
MSH4O15457 MIR4741-201ENST00000579822 90 ntBASIC16.92■□□□□ 0.3
MSH4O15457 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC16.92■□□□□ 0.3
MSH4O15457 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC16.92■□□□□ 0.3
MSH4O15457 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.92■□□□□ 0.3
MSH4O15457 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
MSH4O15457 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC16.92■□□□□ 0.3
MSH4O15457 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.92■□□□□ 0.3
MSH4O15457 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH4O15457 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
MSH4O15457 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 REXO1L6P-201ENST00000603433 1515 ntBASIC16.91■□□□□ 0.3
MSH4O15457 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 AP002414.2-201ENST00000591780 3365 ntBASIC16.91■□□□□ 0.3
MSH4O15457 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
MSH4O15457 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.91■□□□□ 0.3
MSH4O15457 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC16.91■□□□□ 0.3
MSH4O15457 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
MSH4O15457 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC16.91■□□□□ 0.3
MSH4O15457 HOMER2P2-201ENST00000451621 847 ntBASIC16.91■□□□□ 0.3
MSH4O15457 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 MIR4683-201ENST00000579659 81 ntBASIC16.91■□□□□ 0.3
MSH4O15457 PPY2P-201ENST00000582808 702 ntBASIC16.91■□□□□ 0.3
MSH4O15457 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.91■□□□□ 0.3
MSH4O15457 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 SALL4P5-201ENST00000419001 1760 ntBASIC16.91■□□□□ 0.3
MSH4O15457 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
MSH4O15457 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 KRT8P4-201ENST00000509735 1454 ntBASIC16.91■□□□□ 0.3
MSH4O15457 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC16.91■□□□□ 0.3
MSH4O15457 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
MSH4O15457 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC16.91■□□□□ 0.3
MSH4O15457 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.91■□□□□ 0.3
MSH4O15457 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
MSH4O15457 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
MSH4O15457 API5-203ENST00000455725 2257 ntTSL 2 BASIC16.9■□□□□ 0.3
MSH4O15457 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC16.9■□□□□ 0.3
MSH4O15457 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms