Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC079776.1-201ENST00000401540 1152 ntBASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 PGF-202ENST00000405431 666 ntTSL 5 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 CFL1-212ENST00000531413 636 ntTSL 3 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 AL360270.3-201ENST00000609118 1348 ntBASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.1■□□□□ 0.01
TRIM39Q9HCM9 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 KRT8P14-201ENST00000414254 1442 ntBASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 OR8S1-201ENST00000310194 1080 ntBASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 BOLA2P3-201ENST00000404566 256 ntBASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 ORC6-206ENST00000568364 888 ntTSL 5 BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 MROH4P-201ENST00000431302 1578 ntBASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 AL009178.2-201ENST00000597278 2719 ntBASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 REXO1L4P-201ENST00000605109 1937 ntBASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.09■□□□□ 0.01
TRIM39Q9HCM9 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.08■□□□□ 0.01
TRIM39Q9HCM9 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TRIM39Q9HCM9 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
TRIM39Q9HCM9 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TRIM39Q9HCM9 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.08■□□□□ 0.01
TRIM39Q9HCM9 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.08■□□□□ 0.01
TRIM39Q9HCM9 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TRIM39Q9HCM9 LRRC59-203ENST00000576448 1531 ntBASIC15.08■□□□□ 0.01
TRIM39Q9HCM9 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 AC106760.1-201ENST00000508690 800 ntBASIC15.08■□□□□ 0
TRIM39Q9HCM9 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms