Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC17.33■□□□□ 0.36
USP28Q96RU2 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC17.33■□□□□ 0.36
USP28Q96RU2 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP28Q96RU2 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP28Q96RU2 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
USP28Q96RU2 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
USP28Q96RU2 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
USP28Q96RU2 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP28Q96RU2 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
USP28Q96RU2 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
USP28Q96RU2 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
USP28Q96RU2 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP28Q96RU2 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC17.33■□□□□ 0.36
USP28Q96RU2 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
USP28Q96RU2 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC17.32■□□□□ 0.36
USP28Q96RU2 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP28Q96RU2 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC17.32■□□□□ 0.36
USP28Q96RU2 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP28Q96RU2 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
USP28Q96RU2 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP28Q96RU2 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
USP28Q96RU2 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC17.32■□□□□ 0.36
USP28Q96RU2 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC17.32■□□□□ 0.36
USP28Q96RU2 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
USP28Q96RU2 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
USP28Q96RU2 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
USP28Q96RU2 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP28Q96RU2 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP28Q96RU2 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP28Q96RU2 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC17.32■□□□□ 0.36
USP28Q96RU2 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP28Q96RU2 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP28Q96RU2 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP28Q96RU2 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP28Q96RU2 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.32■□□□□ 0.36
USP28Q96RU2 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.32■□□□□ 0.36
USP28Q96RU2 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.32■□□□□ 0.36
USP28Q96RU2 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.32■□□□□ 0.36
USP28Q96RU2 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.32■□□□□ 0.36
USP28Q96RU2 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.32■□□□□ 0.36
USP28Q96RU2 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.32■□□□□ 0.36
USP28Q96RU2 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.32■□□□□ 0.36
USP28Q96RU2 SPDYE22P-201ENST00000582158 798 ntBASIC17.32■□□□□ 0.36
USP28Q96RU2 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.32■□□□□ 0.36
USP28Q96RU2 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
USP28Q96RU2 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP28Q96RU2 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP28Q96RU2 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC17.32■□□□□ 0.36
USP28Q96RU2 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP28Q96RU2 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP28Q96RU2 AC041040.2-201ENST00000622926 2899 ntBASIC17.32■□□□□ 0.36
USP28Q96RU2 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC17.32■□□□□ 0.36
USP28Q96RU2 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP28Q96RU2 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP28Q96RU2 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC17.32■□□□□ 0.36
USP28Q96RU2 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
USP28Q96RU2 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC17.31■□□□□ 0.36
USP28Q96RU2 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
USP28Q96RU2 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
USP28Q96RU2 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC17.31■□□□□ 0.36
USP28Q96RU2 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC17.31■□□□□ 0.36
USP28Q96RU2 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC17.31■□□□□ 0.36
USP28Q96RU2 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
USP28Q96RU2 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
USP28Q96RU2 BASP1P1-201ENST00000430708 665 ntBASIC17.31■□□□□ 0.36
USP28Q96RU2 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.31■□□□□ 0.36
USP28Q96RU2 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC17.31■□□□□ 0.36
USP28Q96RU2 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.31■□□□□ 0.36
USP28Q96RU2 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.31■□□□□ 0.36
USP28Q96RU2 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.31■□□□□ 0.36
USP28Q96RU2 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.31■□□□□ 0.36
USP28Q96RU2 AC093813.1-201ENST00000605066 256 ntBASIC17.31■□□□□ 0.36
USP28Q96RU2 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.31■□□□□ 0.36
USP28Q96RU2 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
USP28Q96RU2 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC17.31■□□□□ 0.36
USP28Q96RU2 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 AC005840.4-201ENST00000541242 2494 ntBASIC17.31■□□□□ 0.36
USP28Q96RU2 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
USP28Q96RU2 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC17.31■□□□□ 0.36
USP28Q96RU2 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP28Q96RU2 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP28Q96RU2 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
USP28Q96RU2 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms