Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AL627422.1-201ENST00000434104 580 ntBASIC16.32■□□□□ 0.2
LRCH3Q96II8 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 MIR4522-201ENST00000584932 87 ntBASIC16.32■□□□□ 0.2
LRCH3Q96II8 AL139339.2-201ENST00000608063 657 ntBASIC16.32■□□□□ 0.2
LRCH3Q96II8 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 AC005052.1-201ENST00000625181 2492 ntBASIC16.31■□□□□ 0.2
LRCH3Q96II8 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 AL139094.1-201ENST00000405549 1188 ntBASIC16.31■□□□□ 0.2
LRCH3Q96II8 HIST2H2BA-201ENST00000412169 381 ntBASIC16.31■□□□□ 0.2
LRCH3Q96II8 EIF3FP3-201ENST00000434851 1086 ntBASIC16.31■□□□□ 0.2
LRCH3Q96II8 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 LINC00634-202ENST00000505157 222 ntBASIC16.31■□□□□ 0.2
LRCH3Q96II8 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 HNRNPA1P36-201ENST00000521313 955 ntBASIC16.31■□□□□ 0.2
LRCH3Q96II8 FAM86B3P-203ENST00000523992 854 ntBASIC16.31■□□□□ 0.2
LRCH3Q96II8 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 MIR4683-201ENST00000579659 81 ntBASIC16.31■□□□□ 0.2
LRCH3Q96II8 AC009955.4-201ENST00000597192 544 ntBASIC16.31■□□□□ 0.2
LRCH3Q96II8 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 AC004686.1-201ENST00000605113 538 ntBASIC16.31■□□□□ 0.2
LRCH3Q96II8 AC087392.5-201ENST00000612517 489 ntBASIC16.31■□□□□ 0.2
LRCH3Q96II8 AC025262.2-201ENST00000623975 1056 ntBASIC16.31■□□□□ 0.2
LRCH3Q96II8 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.31■□□□□ 0.2
LRCH3Q96II8 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LRCH3Q96II8 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LRCH3Q96II8 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LRCH3Q96II8 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LRCH3Q96II8 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
LRCH3Q96II8 AC024909.3-201ENST00000611513 2257 ntBASIC16.3■□□□□ 0.2
LRCH3Q96II8 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LRCH3Q96II8 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LRCH3Q96II8 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
LRCH3Q96II8 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
LRCH3Q96II8 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
LRCH3Q96II8 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.3■□□□□ 0.2
LRCH3Q96II8 ENPP7P8-202ENST00000527856 1345 ntBASIC16.3■□□□□ 0.2
LRCH3Q96II8 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LRCH3Q96II8 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
LRCH3Q96II8 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LRCH3Q96II8 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LRCH3Q96II8 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
LRCH3Q96II8 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms