Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC19.54■□□□□ 0.72
USP54Q70EL1 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
USP54Q70EL1 AC022532.1-201ENST00000624563 1728 ntBASIC19.54■□□□□ 0.72
USP54Q70EL1 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP54Q70EL1 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP54Q70EL1 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP54Q70EL1 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP54Q70EL1 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP54Q70EL1 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC19.54■□□□□ 0.72
USP54Q70EL1 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
USP54Q70EL1 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP54Q70EL1 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP54Q70EL1 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP54Q70EL1 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC19.53■□□□□ 0.72
USP54Q70EL1 HIST2H2BA-201ENST00000412169 381 ntBASIC19.53■□□□□ 0.72
USP54Q70EL1 RPL13AP19-201ENST00000434320 584 ntBASIC19.53■□□□□ 0.72
USP54Q70EL1 AL161932.2-201ENST00000435436 679 ntBASIC19.53■□□□□ 0.72
USP54Q70EL1 RPL7P35-201ENST00000446943 740 ntBASIC19.53■□□□□ 0.72
USP54Q70EL1 NAA40-205ENST00000539656 577 ntTSL 4 BASIC19.53■□□□□ 0.72
USP54Q70EL1 AC007952.4-201ENST00000573866 637 ntBASIC19.53■□□□□ 0.72
USP54Q70EL1 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC19.53■□□□□ 0.72
USP54Q70EL1 IL9RP3-201ENST00000442856 1674 ntBASIC19.53■□□□□ 0.72
USP54Q70EL1 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP54Q70EL1 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
USP54Q70EL1 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP54Q70EL1 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC19.53■□□□□ 0.72
USP54Q70EL1 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP54Q70EL1 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP54Q70EL1 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP54Q70EL1 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP54Q70EL1 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC19.53■□□□□ 0.72
USP54Q70EL1 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
USP54Q70EL1 MX1-218ENST00000619682 1980 ntTSL 5 BASIC19.53■□□□□ 0.72
USP54Q70EL1 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP54Q70EL1 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
USP54Q70EL1 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP54Q70EL1 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP54Q70EL1 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP54Q70EL1 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC19.53■□□□□ 0.72
USP54Q70EL1 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC19.52■□□□□ 0.72
USP54Q70EL1 KRT18P66-201ENST00000452970 1269 ntBASIC19.52■□□□□ 0.72
USP54Q70EL1 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC19.52■□□□□ 0.72
USP54Q70EL1 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP54Q70EL1 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
USP54Q70EL1 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USP54Q70EL1 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USP54Q70EL1 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP54Q70EL1 AC025271.4-201ENST00000621477 1726 ntBASIC19.52■□□□□ 0.72
USP54Q70EL1 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP54Q70EL1 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
USP54Q70EL1 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
USP54Q70EL1 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP54Q70EL1 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC19.52■□□□□ 0.72
USP54Q70EL1 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP54Q70EL1 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC19.52■□□□□ 0.72
USP54Q70EL1 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC19.52■□□□□ 0.72
USP54Q70EL1 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
USP54Q70EL1 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC19.52■□□□□ 0.72
USP54Q70EL1 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC19.52■□□□□ 0.72
USP54Q70EL1 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP54Q70EL1 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP54Q70EL1 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC19.52■□□□□ 0.72
USP54Q70EL1 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC19.52■□□□□ 0.72
USP54Q70EL1 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP54Q70EL1 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP54Q70EL1 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP54Q70EL1 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP54Q70EL1 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP54Q70EL1 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP54Q70EL1 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC19.52■□□□□ 0.71
USP54Q70EL1 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC19.52■□□□□ 0.71
USP54Q70EL1 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
USP54Q70EL1 DUX4L50-201ENST00000455245 715 ntBASIC19.52■□□□□ 0.71
USP54Q70EL1 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC19.52■□□□□ 0.71
USP54Q70EL1 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC19.52■□□□□ 0.71
USP54Q70EL1 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC19.52■□□□□ 0.71
USP54Q70EL1 AC138701.2-201ENST00000553634 226 ntBASIC19.52■□□□□ 0.71
USP54Q70EL1 AC087392.5-201ENST00000612517 489 ntBASIC19.52■□□□□ 0.71
USP54Q70EL1 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP54Q70EL1 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP54Q70EL1 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP54Q70EL1 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC19.52■□□□□ 0.71
USP54Q70EL1 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
USP54Q70EL1 LAP3P2-201ENST00000454686 1454 ntBASIC19.52■□□□□ 0.71
USP54Q70EL1 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC19.52■□□□□ 0.71
USP54Q70EL1 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP54Q70EL1 AC064801.2-201ENST00000625052 1303 ntBASIC19.51■□□□□ 0.71
USP54Q70EL1 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP54Q70EL1 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP54Q70EL1 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC19.51■□□□□ 0.71
USP54Q70EL1 BRD7P5-201ENST00000299197 1822 ntBASIC19.51■□□□□ 0.71
USP54Q70EL1 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP54Q70EL1 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP54Q70EL1 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC19.51■□□□□ 0.71
USP54Q70EL1 AL591471.1-201ENST00000621855 229 ntBASIC19.51■□□□□ 0.71
USP54Q70EL1 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
USP54Q70EL1 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC19.51■□□□□ 0.71
USP54Q70EL1 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
USP54Q70EL1 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC19.51■□□□□ 0.71
USP54Q70EL1 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms