Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
YBX1P67809 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.79□□□□□ -0.04
YBX1P67809 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC14.79□□□□□ -0.04
YBX1P67809 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
YBX1P67809 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
YBX1P67809 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
YBX1P67809 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.78□□□□□ -0.04
YBX1P67809 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
YBX1P67809 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
YBX1P67809 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
YBX1P67809 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
YBX1P67809 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
YBX1P67809 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
YBX1P67809 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
YBX1P67809 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.78□□□□□ -0.04
YBX1P67809 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
YBX1P67809 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
YBX1P67809 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.78□□□□□ -0.04
YBX1P67809 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.78□□□□□ -0.04
YBX1P67809 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.78□□□□□ -0.04
YBX1P67809 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
YBX1P67809 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC14.78□□□□□ -0.04
YBX1P67809 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC14.78□□□□□ -0.04
YBX1P67809 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.78□□□□□ -0.04
YBX1P67809 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.78□□□□□ -0.04
YBX1P67809 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.78□□□□□ -0.04
YBX1P67809 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.78□□□□□ -0.04
YBX1P67809 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.78□□□□□ -0.04
YBX1P67809 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.78□□□□□ -0.04
YBX1P67809 AC015656.1-201ENST00000624209 3578 ntBASIC14.78□□□□□ -0.04
YBX1P67809 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
YBX1P67809 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
YBX1P67809 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.78□□□□□ -0.04
YBX1P67809 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.78□□□□□ -0.04
YBX1P67809 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
YBX1P67809 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.78□□□□□ -0.04
YBX1P67809 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.77□□□□□ -0.04
YBX1P67809 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
YBX1P67809 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
YBX1P67809 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
YBX1P67809 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
YBX1P67809 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
YBX1P67809 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC14.77□□□□□ -0.04
YBX1P67809 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
YBX1P67809 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
YBX1P67809 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
YBX1P67809 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
YBX1P67809 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
YBX1P67809 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.77□□□□□ -0.04
YBX1P67809 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
YBX1P67809 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
YBX1P67809 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
YBX1P67809 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
YBX1P67809 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
YBX1P67809 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
YBX1P67809 CU639417.3-201ENST00000624240 1404 ntBASIC14.77□□□□□ -0.04
YBX1P67809 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
YBX1P67809 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
YBX1P67809 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
YBX1P67809 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC14.77□□□□□ -0.04
YBX1P67809 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
YBX1P67809 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
YBX1P67809 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
YBX1P67809 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
YBX1P67809 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC14.77□□□□□ -0.05
YBX1P67809 AL512384.1-201ENST00000406683 331 ntBASIC14.77□□□□□ -0.05
YBX1P67809 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.77□□□□□ -0.05
YBX1P67809 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.77□□□□□ -0.05
YBX1P67809 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.77□□□□□ -0.05
YBX1P67809 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.77□□□□□ -0.05
YBX1P67809 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
YBX1P67809 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms