Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 MYO15B-237ENST00000642007 4893 ntBASIC14.69□□□□□ -0.06
FOXA1P55317 AL354702.1-201ENST00000442006 1960 ntBASIC14.69□□□□□ -0.06
FOXA1P55317 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.69□□□□□ -0.06
FOXA1P55317 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.69□□□□□ -0.06
FOXA1P55317 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.69□□□□□ -0.06
FOXA1P55317 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.69□□□□□ -0.06
FOXA1P55317 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
FOXA1P55317 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.69□□□□□ -0.06
FOXA1P55317 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.69□□□□□ -0.06
FOXA1P55317 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.69□□□□□ -0.06
FOXA1P55317 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.69□□□□□ -0.06
FOXA1P55317 FAM86LP-201ENST00000478302 853 ntBASIC14.69□□□□□ -0.06
FOXA1P55317 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.69□□□□□ -0.06
FOXA1P55317 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.69□□□□□ -0.06
FOXA1P55317 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.69□□□□□ -0.06
FOXA1P55317 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.69□□□□□ -0.06
FOXA1P55317 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
FOXA1P55317 AL662799.1-202ENST00000614205 422 ntBASIC14.69□□□□□ -0.06
FOXA1P55317 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.69□□□□□ -0.06
FOXA1P55317 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
FOXA1P55317 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.69□□□□□ -0.06
FOXA1P55317 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
FOXA1P55317 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.69□□□□□ -0.06
FOXA1P55317 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.69□□□□□ -0.06
FOXA1P55317 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.69□□□□□ -0.06
FOXA1P55317 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.69□□□□□ -0.06
FOXA1P55317 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
FOXA1P55317 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
FOXA1P55317 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.68□□□□□ -0.06
FOXA1P55317 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
FOXA1P55317 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.68□□□□□ -0.06
FOXA1P55317 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.68□□□□□ -0.06
FOXA1P55317 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.68□□□□□ -0.06
FOXA1P55317 AL138799.1-201ENST00000448213 1675 ntBASIC14.68□□□□□ -0.06
FOXA1P55317 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 AC152010.1-201ENST00000415779 2006 ntBASIC14.68□□□□□ -0.06
FOXA1P55317 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.68□□□□□ -0.06
FOXA1P55317 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.68□□□□□ -0.06
FOXA1P55317 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.68□□□□□ -0.06
FOXA1P55317 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.68□□□□□ -0.06
FOXA1P55317 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.68□□□□□ -0.06
FOXA1P55317 METTL21AP1-201ENST00000438852 635 ntBASIC14.68□□□□□ -0.06
FOXA1P55317 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.68□□□□□ -0.06
FOXA1P55317 AC026410.3-201ENST00000514280 936 ntBASIC14.68□□□□□ -0.06
FOXA1P55317 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 AC104794.3-201ENST00000566840 1248 ntBASIC14.68□□□□□ -0.06
FOXA1P55317 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.68□□□□□ -0.06
FOXA1P55317 AC023511.2-201ENST00000618803 211 ntBASIC14.68□□□□□ -0.06
FOXA1P55317 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.68□□□□□ -0.06
FOXA1P55317 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.68□□□□□ -0.06
FOXA1P55317 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA1P55317 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
FOXA1P55317 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.68□□□□□ -0.06
FOXA1P55317 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA1P55317 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA1P55317 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA1P55317 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA1P55317 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms