Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.24□□□□□ -0.29
COL8A1P27658 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC13.24□□□□□ -0.29
COL8A1P27658 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
COL8A1P27658 AP001282.1-201ENST00000531301 1499 ntBASIC13.24□□□□□ -0.29
COL8A1P27658 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC13.24□□□□□ -0.29
COL8A1P27658 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC13.24□□□□□ -0.29
COL8A1P27658 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC13.24□□□□□ -0.29
COL8A1P27658 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
COL8A1P27658 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 RPS15-201ENST00000233609 534 ntTSL 2 BASIC13.24□□□□□ -0.29
COL8A1P27658 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 OR2K2-202ENST00000374428 1038 ntBASIC13.24□□□□□ -0.29
COL8A1P27658 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
COL8A1P27658 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 BUD31-205ENST00000456893 512 ntTSL 5 BASIC13.24□□□□□ -0.29
COL8A1P27658 POU5F1P6-201ENST00000466990 990 ntBASIC13.24□□□□□ -0.29
COL8A1P27658 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.24□□□□□ -0.29
COL8A1P27658 AC109587.1-201ENST00000482368 962 ntTSL 3 BASIC13.24□□□□□ -0.29
COL8A1P27658 REEP5-205ENST00000504247 480 ntTSL 5 BASIC13.24□□□□□ -0.29
COL8A1P27658 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC13.24□□□□□ -0.29
COL8A1P27658 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC13.24□□□□□ -0.29
COL8A1P27658 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC13.24□□□□□ -0.29
COL8A1P27658 FOS-204ENST00000554617 796 ntTSL 2 BASIC13.24□□□□□ -0.29
COL8A1P27658 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC13.24□□□□□ -0.29
COL8A1P27658 DNM1P51-201ENST00000558149 522 ntBASIC13.24□□□□□ -0.29
COL8A1P27658 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC13.24□□□□□ -0.29
COL8A1P27658 AC091489.1-201ENST00000563866 691 ntTSL 3 BASIC13.24□□□□□ -0.29
COL8A1P27658 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC13.24□□□□□ -0.29
COL8A1P27658 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC13.24□□□□□ -0.29
COL8A1P27658 MIR4754-201ENST00000582477 89 ntBASIC13.24□□□□□ -0.29
COL8A1P27658 RPS15-205ENST00000586686 562 ntTSL 5 BASIC13.24□□□□□ -0.29
COL8A1P27658 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC13.24□□□□□ -0.29
COL8A1P27658 RPS15-208ENST00000591804 711 ntTSL 5 BASIC13.24□□□□□ -0.29
COL8A1P27658 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC13.24□□□□□ -0.29
COL8A1P27658 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
COL8A1P27658 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC13.24□□□□□ -0.29
COL8A1P27658 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
COL8A1P27658 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
COL8A1P27658 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
COL8A1P27658 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC13.24□□□□□ -0.29
COL8A1P27658 AMT-224ENST00000635808 1610 ntTSL 5 BASIC13.24□□□□□ -0.29
COL8A1P27658 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
COL8A1P27658 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.24□□□□□ -0.29
COL8A1P27658 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL8A1P27658 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC13.23□□□□□ -0.29
COL8A1P27658 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
COL8A1P27658 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC13.23□□□□□ -0.29
COL8A1P27658 CAP2P1-201ENST00000557743 1390 ntBASIC13.23□□□□□ -0.29
COL8A1P27658 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
COL8A1P27658 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
COL8A1P27658 LINC02199-201ENST00000506655 2702 ntBASIC13.23□□□□□ -0.29
COL8A1P27658 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC13.23□□□□□ -0.29
COL8A1P27658 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
COL8A1P27658 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
COL8A1P27658 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC13.23□□□□□ -0.29
COL8A1P27658 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC13.23□□□□□ -0.29
COL8A1P27658 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
COL8A1P27658 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
COL8A1P27658 POM121L8P-201ENST00000417732 1281 ntBASIC13.23□□□□□ -0.29
COL8A1P27658 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC13.23□□□□□ -0.29
COL8A1P27658 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC13.23□□□□□ -0.29
COL8A1P27658 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 POM121L9P-203ENST00000441984 1285 ntBASIC13.23□□□□□ -0.29
COL8A1P27658 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC13.23□□□□□ -0.29
COL8A1P27658 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC13.23□□□□□ -0.29
COL8A1P27658 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC13.23□□□□□ -0.29
COL8A1P27658 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL8A1P27658 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms