Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 SAP18P2-201ENST00000434334 459 ntBASIC11.47□□□□□ -0.57
COL6A5A8TX70 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 RN7SL578P-201ENST00000477781 283 ntBASIC11.47□□□□□ -0.57
COL6A5A8TX70 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 ME2P1-201ENST00000426028 1970 ntBASIC11.47□□□□□ -0.57
COL6A5A8TX70 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
COL6A5A8TX70 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
COL6A5A8TX70 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
COL6A5A8TX70 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
COL6A5A8TX70 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.57
COL6A5A8TX70 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
COL6A5A8TX70 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.57
COL6A5A8TX70 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
COL6A5A8TX70 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
COL6A5A8TX70 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC11.46□□□□□ -0.57
COL6A5A8TX70 PGAM1P11-201ENST00000416729 680 ntBASIC11.46□□□□□ -0.57
COL6A5A8TX70 AL512599.1-201ENST00000430724 685 ntBASIC11.46□□□□□ -0.57
COL6A5A8TX70 CDCA4P4-201ENST00000435216 680 ntBASIC11.46□□□□□ -0.57
COL6A5A8TX70 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC11.46□□□□□ -0.57
COL6A5A8TX70 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC11.46□□□□□ -0.57
COL6A5A8TX70 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC11.46□□□□□ -0.57
COL6A5A8TX70 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC11.46□□□□□ -0.57
COL6A5A8TX70 RN7SL300P-201ENST00000582522 318 ntBASIC11.46□□□□□ -0.57
COL6A5A8TX70 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC11.46□□□□□ -0.57
COL6A5A8TX70 AL357143.1-203ENST00000639750 881 ntBASIC11.46□□□□□ -0.57
COL6A5A8TX70 AL662844.4-201ENST00000606367 2838 ntBASIC11.46□□□□□ -0.57
COL6A5A8TX70 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
COL6A5A8TX70 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
COL6A5A8TX70 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
COL6A5A8TX70 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
COL6A5A8TX70 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
COL6A5A8TX70 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC11.46□□□□□ -0.57
COL6A5A8TX70 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
COL6A5A8TX70 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC11.46□□□□□ -0.57
COL6A5A8TX70 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
COL6A5A8TX70 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
COL6A5A8TX70 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC11.46□□□□□ -0.57
COL6A5A8TX70 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
COL6A5A8TX70 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
COL6A5A8TX70 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
COL6A5A8TX70 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC11.46□□□□□ -0.58
COL6A5A8TX70 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
COL6A5A8TX70 RNVU1-8-201ENST00000364272 125 ntBASIC11.46□□□□□ -0.58
COL6A5A8TX70 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC11.46□□□□□ -0.58
COL6A5A8TX70 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC11.46□□□□□ -0.58
COL6A5A8TX70 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC11.46□□□□□ -0.58
COL6A5A8TX70 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC11.46□□□□□ -0.58
COL6A5A8TX70 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
COL6A5A8TX70 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
COL6A5A8TX70 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC11.46□□□□□ -0.58
COL6A5A8TX70 MIR6720-201ENST00000611664 98 ntBASIC11.46□□□□□ -0.58
COL6A5A8TX70 NF1P11-201ENST00000621292 1282 ntBASIC11.46□□□□□ -0.58
COL6A5A8TX70 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
COL6A5A8TX70 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC11.46□□□□□ -0.58
COL6A5A8TX70 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
COL6A5A8TX70 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
COL6A5A8TX70 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
COL6A5A8TX70 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
COL6A5A8TX70 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
COL6A5A8TX70 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC11.46□□□□□ -0.58
COL6A5A8TX70 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
COL6A5A8TX70 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
COL6A5A8TX70 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
COL6A5A8TX70 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
COL6A5A8TX70 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 AP001094.4-201ENST00000579008 2176 ntBASIC11.45□□□□□ -0.58
COL6A5A8TX70 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 AL390961.4-201ENST00000623958 2535 ntBASIC11.45□□□□□ -0.58
COL6A5A8TX70 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 AL954722.1-201ENST00000431238 259 ntBASIC11.45□□□□□ -0.58
COL6A5A8TX70 RGS5-216ENST00000449680 788 ntTSL 3 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 RNASEH2CP1-201ENST00000454281 502 ntBASIC11.45□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms