Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 AL607033.1-201ENST00000623900 1599 ntBASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CHMP1AQ9HD42 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 ADH5P3-201ENST00000433842 1137 ntBASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 AC005237.2-201ENST00000434368 219 ntBASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 EEF1DP4-201ENST00000446006 880 ntBASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 AC055717.3-201ENST00000622967 595 ntBASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 AC118758.2-201ENST00000614242 2813 ntBASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 TLL2-201ENST00000357947 6756 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 UBE3A-226ENST00000637886 8725 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CHMP1AQ9HD42 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 AZGP1P1-201ENST00000411909 902 ntBASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 LINC01225-203ENST00000563550 1244 ntBASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms