Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
USP28Q96RU2 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP28Q96RU2 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP28Q96RU2 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.35■□□□□ 0.37
USP28Q96RU2 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.35■□□□□ 0.37
USP28Q96RU2 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP28Q96RU2 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP28Q96RU2 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.35■□□□□ 0.37
USP28Q96RU2 BRI3BPP1-201ENST00000594224 787 ntBASIC17.35■□□□□ 0.37
USP28Q96RU2 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.35■□□□□ 0.37
USP28Q96RU2 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP28Q96RU2 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
USP28Q96RU2 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP28Q96RU2 KRT8P14-201ENST00000414254 1442 ntBASIC17.35■□□□□ 0.37
USP28Q96RU2 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC17.35■□□□□ 0.37
USP28Q96RU2 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
USP28Q96RU2 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC17.35■□□□□ 0.37
USP28Q96RU2 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP28Q96RU2 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC17.35■□□□□ 0.37
USP28Q96RU2 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC17.35■□□□□ 0.37
USP28Q96RU2 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP28Q96RU2 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC17.35■□□□□ 0.37
USP28Q96RU2 OS9-204ENST00000389146 2091 ntTSL 2 BASIC17.35■□□□□ 0.37
USP28Q96RU2 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC17.35■□□□□ 0.37
USP28Q96RU2 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC17.35■□□□□ 0.37
USP28Q96RU2 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
USP28Q96RU2 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC17.35■□□□□ 0.37
USP28Q96RU2 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
USP28Q96RU2 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 TKT-201ENST00000296289 1931 ntTSL 5 BASIC17.34■□□□□ 0.37
USP28Q96RU2 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
USP28Q96RU2 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
USP28Q96RU2 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC17.34■□□□□ 0.37
USP28Q96RU2 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.34■□□□□ 0.37
USP28Q96RU2 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC17.34■□□□□ 0.37
USP28Q96RU2 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
USP28Q96RU2 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC17.34■□□□□ 0.37
USP28Q96RU2 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.34■□□□□ 0.37
USP28Q96RU2 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC17.34■□□□□ 0.37
USP28Q96RU2 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.34■□□□□ 0.37
USP28Q96RU2 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.34■□□□□ 0.37
USP28Q96RU2 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
USP28Q96RU2 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
USP28Q96RU2 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.34■□□□□ 0.37
USP28Q96RU2 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.34■□□□□ 0.37
USP28Q96RU2 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.34■□□□□ 0.37
USP28Q96RU2 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
USP28Q96RU2 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC17.34■□□□□ 0.37
USP28Q96RU2 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP28Q96RU2 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC17.34■□□□□ 0.37
USP28Q96RU2 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC17.34■□□□□ 0.37
USP28Q96RU2 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
USP28Q96RU2 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
USP28Q96RU2 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP28Q96RU2 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP28Q96RU2 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC17.33■□□□□ 0.37
USP28Q96RU2 RDX-218ENST00000544551 4117 ntTSL 2 BASIC17.33■□□□□ 0.37
USP28Q96RU2 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
USP28Q96RU2 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
USP28Q96RU2 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC17.33■□□□□ 0.37
USP28Q96RU2 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
USP28Q96RU2 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
USP28Q96RU2 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
USP28Q96RU2 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
USP28Q96RU2 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.37
USP28Q96RU2 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP28Q96RU2 AMT-232ENST00000636199 1546 ntTSL 5 BASIC17.33■□□□□ 0.37
USP28Q96RU2 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP28Q96RU2 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
USP28Q96RU2 AL645937.2-201ENST00000396808 931 ntBASIC17.33■□□□□ 0.36
USP28Q96RU2 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC17.33■□□□□ 0.36
USP28Q96RU2 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
USP28Q96RU2 AL512638.1-201ENST00000457493 794 ntBASIC17.33■□□□□ 0.36
USP28Q96RU2 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.33■□□□□ 0.36
USP28Q96RU2 AC093214.1-201ENST00000511688 1107 ntBASIC17.33■□□□□ 0.36
USP28Q96RU2 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.33■□□□□ 0.36
USP28Q96RU2 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.33■□□□□ 0.36
USP28Q96RU2 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.33■□□□□ 0.36
USP28Q96RU2 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.33■□□□□ 0.36
USP28Q96RU2 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.33■□□□□ 0.36
USP28Q96RU2 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.33■□□□□ 0.36
USP28Q96RU2 PRSS30P-206ENST00000641773 873 ntBASIC17.33■□□□□ 0.36
USP28Q96RU2 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP28Q96RU2 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms