Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 B9D1-203ENST00000395615 805 ntTSL 3 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 PGGT1BP2-201ENST00000398621 1028 ntBASIC11.75□□□□□ -0.53
CCDC140Q96MF4 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 EIF3FP3-201ENST00000434851 1086 ntBASIC11.75□□□□□ -0.53
CCDC140Q96MF4 AC093433.1-201ENST00000458048 571 ntBASIC11.75□□□□□ -0.53
CCDC140Q96MF4 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 LHX6-205ENST00000464484 666 ntTSL 2 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 AC022137.2-201ENST00000503482 481 ntBASIC11.75□□□□□ -0.53
CCDC140Q96MF4 KRT18P25-201ENST00000508931 1278 ntBASIC11.75□□□□□ -0.53
CCDC140Q96MF4 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 AC022616.1-201ENST00000518688 554 ntBASIC11.75□□□□□ -0.53
CCDC140Q96MF4 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 DUX4L47-201ENST00000566374 394 ntBASIC11.75□□□□□ -0.53
CCDC140Q96MF4 AC009486.1-201ENST00000569860 813 ntBASIC11.75□□□□□ -0.53
CCDC140Q96MF4 MIR3197-201ENST00000582241 73 ntBASIC11.75□□□□□ -0.53
CCDC140Q96MF4 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 MSTO2P-201ENST00000314835 1709 ntBASIC11.74□□□□□ -0.53
CCDC140Q96MF4 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 COCH-203ENST00000460581 2688 ntTSL 2 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 AL390755.1-201ENST00000623716 2027 ntBASIC11.74□□□□□ -0.53
CCDC140Q96MF4 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 AC018442.1-201ENST00000421439 2061 ntBASIC11.74□□□□□ -0.53
CCDC140Q96MF4 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 AC098614.1-201ENST00000368528 745 ntBASIC11.74□□□□□ -0.53
CCDC140Q96MF4 CALY-203ENST00000368558 825 ntTSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 APOA1-205ENST00000375329 927 ntTSL 2 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 MIR5189-201ENST00000577370 114 ntBASIC11.74□□□□□ -0.53
CCDC140Q96MF4 KSR1-207ENST00000578981 748 ntTSL 4 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 RPS15-202ENST00000585665 467 ntTSL 3 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 AC027307.3-201ENST00000594262 1100 ntBASIC11.74□□□□□ -0.53
CCDC140Q96MF4 LINC02084-201ENST00000606069 1096 ntBASIC11.74□□□□□ -0.53
CCDC140Q96MF4 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 KRT8P35-201ENST00000483942 1338 ntBASIC11.74□□□□□ -0.53
CCDC140Q96MF4 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms