Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 AC104457.1-201ENST00000401024 814 ntBASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 AL442647.2-201ENST00000429864 857 ntBASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 SLC25A47P1-201ENST00000531577 414 ntBASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 MIR5189-201ENST00000577370 114 ntBASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 AC107373.2-201ENST00000607735 490 ntBASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 AC013726.1-201ENST00000563747 2285 ntBASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 DRD5P1-201ENST00000456605 1438 ntBASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 ZBTB45P1-201ENST00000452761 1456 ntBASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 MIR1909-201ENST00000411312 80 ntBASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 SOCS2P1-201ENST00000417727 557 ntBASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 CLUHP6-201ENST00000580789 941 ntBASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 AC000095.1-201ENST00000603208 874 ntBASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 AC005252.2-201ENST00000624630 1141 ntBASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 HNRNPA1P48-201ENST00000562726 1377 ntBASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP4CQ96CF2 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CHMP4CQ96CF2 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CHMP4CQ96CF2 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC18.14■□□□□ 0.5
CHMP4CQ96CF2 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CHMP4CQ96CF2 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CHMP4CQ96CF2 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CHMP4CQ96CF2 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms