Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CPNE4Q96A23 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CPNE4Q96A23 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CPNE4Q96A23 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC13.69□□□□□ -0.22
CPNE4Q96A23 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CPNE4Q96A23 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CPNE4Q96A23 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC13.69□□□□□ -0.22
CPNE4Q96A23 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CPNE4Q96A23 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CPNE4Q96A23 WASH3P-207ENST00000560956 1394 ntBASIC13.69□□□□□ -0.22
CPNE4Q96A23 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC13.69□□□□□ -0.22
CPNE4Q96A23 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CPNE4Q96A23 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
CPNE4Q96A23 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CPNE4Q96A23 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC13.69□□□□□ -0.22
CPNE4Q96A23 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CPNE4Q96A23 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CPNE4Q96A23 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 REXO1L4P-201ENST00000605109 1937 ntBASIC13.68□□□□□ -0.22
CPNE4Q96A23 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 MROH4P-201ENST00000431302 1578 ntBASIC13.68□□□□□ -0.22
CPNE4Q96A23 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 BOLA2P3-201ENST00000404566 256 ntBASIC13.68□□□□□ -0.22
CPNE4Q96A23 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 RPL28-203ENST00000428193 573 ntTSL 2 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 RPL28-204ENST00000431533 590 ntTSL 2 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 AP001889.1-201ENST00000525414 633 ntBASIC13.68□□□□□ -0.22
CPNE4Q96A23 RPL28-207ENST00000558815 616 ntTSL 2 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 LRRC59-203ENST00000576448 1531 ntBASIC13.68□□□□□ -0.22
CPNE4Q96A23 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 AP002414.2-201ENST00000591780 3365 ntBASIC13.68□□□□□ -0.22
CPNE4Q96A23 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CPNE4Q96A23 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CPNE4Q96A23 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 MYO15B-237ENST00000642007 4893 ntBASIC13.67□□□□□ -0.22
CPNE4Q96A23 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms