Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
VPS8Q8N3P4 AL022328.3-201ENST00000607943 679 ntBASIC23.33■■□□□ 1.33
VPS8Q8N3P4 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
VPS8Q8N3P4 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC23.33■■□□□ 1.33
VPS8Q8N3P4 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
VPS8Q8N3P4 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
VPS8Q8N3P4 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
VPS8Q8N3P4 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.32
VPS8Q8N3P4 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
VPS8Q8N3P4 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
VPS8Q8N3P4 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC23.33■■□□□ 1.32
VPS8Q8N3P4 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
VPS8Q8N3P4 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
VPS8Q8N3P4 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC23.33■■□□□ 1.32
VPS8Q8N3P4 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC23.33■■□□□ 1.32
VPS8Q8N3P4 NKG7-204ENST00000595217 816 ntTSL 2 BASIC23.33■■□□□ 1.32
VPS8Q8N3P4 AL451050.2-201ENST00000606967 682 ntBASIC23.33■■□□□ 1.32
VPS8Q8N3P4 MIR6720-201ENST00000611664 98 ntBASIC23.33■■□□□ 1.32
VPS8Q8N3P4 RPL35-206ENST00000629845 340 ntTSL 5 BASIC23.33■■□□□ 1.32
VPS8Q8N3P4 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
VPS8Q8N3P4 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 CICP14-201ENST00000629111 2732 ntBASIC23.32■■□□□ 1.32
VPS8Q8N3P4 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 AP000346.4-201ENST00000614827 381 ntBASIC23.32■■□□□ 1.32
VPS8Q8N3P4 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
VPS8Q8N3P4 AL008718.2-201ENST00000609206 1313 ntBASIC23.32■■□□□ 1.32
VPS8Q8N3P4 AC139712.1-201ENST00000378256 1875 ntBASIC23.31■■□□□ 1.32
VPS8Q8N3P4 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 RNMTL1P1-201ENST00000454103 560 ntBASIC23.31■■□□□ 1.32
VPS8Q8N3P4 KRT8P13-201ENST00000463294 1010 ntBASIC23.31■■□□□ 1.32
VPS8Q8N3P4 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 AC068587.8-201ENST00000641239 219 ntBASIC23.31■■□□□ 1.32
VPS8Q8N3P4 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
VPS8Q8N3P4 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 AMT-239ENST00000636865 1914 ntTSL 5 BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 AL354702.1-201ENST00000442006 1960 ntBASIC23.3■■□□□ 1.32
VPS8Q8N3P4 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 NKAIN1P1-201ENST00000435754 582 ntBASIC23.3■■□□□ 1.32
VPS8Q8N3P4 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
VPS8Q8N3P4 MIR3615-201ENST00000581999 87 ntBASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms