Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 AREG-202ENST00000502307 956 ntTSL 5 BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 DNM1P51-201ENST00000558149 522 ntBASIC20.21■□□□□ 0.83
NPHP3Q7Z494 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 LINC01815-202ENST00000641468 1409 ntBASIC20.2■□□□□ 0.82
NPHP3Q7Z494 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 FAU-202ENST00000434372 533 ntTSL 2 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 AC024293.1-201ENST00000467930 498 ntBASIC20.2■□□□□ 0.82
NPHP3Q7Z494 GCOM2-201ENST00000509133 1104 ntBASIC20.2■□□□□ 0.82
NPHP3Q7Z494 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 AC005041.3-201ENST00000606287 649 ntBASIC20.2■□□□□ 0.82
NPHP3Q7Z494 AP001527.2-201ENST00000614441 631 ntBASIC20.2■□□□□ 0.82
NPHP3Q7Z494 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 AC244250.3-201ENST00000620749 366 ntBASIC20.2■□□□□ 0.82
NPHP3Q7Z494 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
NPHP3Q7Z494 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 VPS18-202ENST00000558474 873 ntTSL 3 BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 MT3-203ENST00000565838 421 ntTSL 3 BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 DBP-202ENST00000593500 712 ntTSL 2 BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 FRMD6-AS1-201ENST00000617151 2229 ntBASIC20.19■□□□□ 0.82
NPHP3Q7Z494 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP3Q7Z494 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 API5-202ENST00000420461 2009 ntTSL 2 BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC20.18■□□□□ 0.82
NPHP3Q7Z494 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms