Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC19.57■□□□□ 0.72
USP54Q70EL1 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP54Q70EL1 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP54Q70EL1 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.57■□□□□ 0.72
USP54Q70EL1 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP54Q70EL1 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP54Q70EL1 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC19.57■□□□□ 0.72
USP54Q70EL1 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.57■□□□□ 0.72
USP54Q70EL1 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP54Q70EL1 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP54Q70EL1 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP54Q70EL1 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
USP54Q70EL1 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP54Q70EL1 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
USP54Q70EL1 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USP54Q70EL1 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
USP54Q70EL1 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP54Q70EL1 AC073869.2-201ENST00000417338 1026 ntBASIC19.56■□□□□ 0.72
USP54Q70EL1 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC19.56■□□□□ 0.72
USP54Q70EL1 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP54Q70EL1 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC19.56■□□□□ 0.72
USP54Q70EL1 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
USP54Q70EL1 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC19.56■□□□□ 0.72
USP54Q70EL1 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP54Q70EL1 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC19.56■□□□□ 0.72
USP54Q70EL1 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USP54Q70EL1 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USP54Q70EL1 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP54Q70EL1 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USP54Q70EL1 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
USP54Q70EL1 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
USP54Q70EL1 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC19.56■□□□□ 0.72
USP54Q70EL1 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC19.56■□□□□ 0.72
USP54Q70EL1 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USP54Q70EL1 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USP54Q70EL1 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP54Q70EL1 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP54Q70EL1 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC19.56■□□□□ 0.72
USP54Q70EL1 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP54Q70EL1 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC19.56■□□□□ 0.72
USP54Q70EL1 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP54Q70EL1 AC007326.1-201ENST00000604539 458 ntBASIC19.56■□□□□ 0.72
USP54Q70EL1 AC107464.3-201ENST00000609172 737 ntBASIC19.56■□□□□ 0.72
USP54Q70EL1 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP54Q70EL1 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP54Q70EL1 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP54Q70EL1 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP54Q70EL1 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.55■□□□□ 0.72
USP54Q70EL1 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP54Q70EL1 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC19.55■□□□□ 0.72
USP54Q70EL1 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
USP54Q70EL1 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP54Q70EL1 HLA-DQB1-202ENST00000399079 1501 ntBASIC19.55■□□□□ 0.72
USP54Q70EL1 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP54Q70EL1 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC19.55■□□□□ 0.72
USP54Q70EL1 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP54Q70EL1 LINC00528-201ENST00000600723 2160 ntBASIC19.55■□□□□ 0.72
USP54Q70EL1 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
USP54Q70EL1 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP54Q70EL1 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
USP54Q70EL1 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC19.55■□□□□ 0.72
USP54Q70EL1 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC19.55■□□□□ 0.72
USP54Q70EL1 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP54Q70EL1 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC19.55■□□□□ 0.72
USP54Q70EL1 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP54Q70EL1 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP54Q70EL1 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC19.55■□□□□ 0.72
USP54Q70EL1 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
USP54Q70EL1 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
USP54Q70EL1 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
USP54Q70EL1 AC006504.5-208ENST00000588784 2401 ntBASIC19.55■□□□□ 0.72
USP54Q70EL1 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
USP54Q70EL1 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC19.55■□□□□ 0.72
USP54Q70EL1 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC19.55■□□□□ 0.72
USP54Q70EL1 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP54Q70EL1 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP54Q70EL1 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP54Q70EL1 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
USP54Q70EL1 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC19.54■□□□□ 0.72
USP54Q70EL1 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP54Q70EL1 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP54Q70EL1 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC19.54■□□□□ 0.72
USP54Q70EL1 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC19.54■□□□□ 0.72
USP54Q70EL1 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
USP54Q70EL1 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP54Q70EL1 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
USP54Q70EL1 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP54Q70EL1 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP54Q70EL1 GUSBP10-201ENST00000417412 665 ntBASIC19.54■□□□□ 0.72
USP54Q70EL1 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC19.54■□□□□ 0.72
USP54Q70EL1 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC19.54■□□□□ 0.72
USP54Q70EL1 LYPLA2P1-203ENST00000447689 696 ntBASIC19.54■□□□□ 0.72
USP54Q70EL1 AC079112.1-201ENST00000454972 939 ntBASIC19.54■□□□□ 0.72
USP54Q70EL1 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC19.54■□□□□ 0.72
USP54Q70EL1 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC19.54■□□□□ 0.72
USP54Q70EL1 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC19.54■□□□□ 0.72
USP54Q70EL1 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC19.54■□□□□ 0.72
USP54Q70EL1 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC19.54■□□□□ 0.72
USP54Q70EL1 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP54Q70EL1 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms