Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC022137.2-201ENST00000503482 481 ntBASIC14.42□□□□□ -0.1
LIM2P55344 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.42□□□□□ -0.1
LIM2P55344 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
LIM2P55344 AC005225.4-201ENST00000557330 545 ntBASIC14.42□□□□□ -0.1
LIM2P55344 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.42□□□□□ -0.1
LIM2P55344 AC132938.2-201ENST00000579188 680 ntBASIC14.42□□□□□ -0.1
LIM2P55344 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.42□□□□□ -0.1
LIM2P55344 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
LIM2P55344 AL591163.1-201ENST00000641757 987 ntBASIC14.42□□□□□ -0.1
LIM2P55344 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.42□□□□□ -0.1
LIM2P55344 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
LIM2P55344 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.42□□□□□ -0.1
LIM2P55344 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
LIM2P55344 AC005089.1-201ENST00000619486 2241 ntBASIC14.42□□□□□ -0.1
LIM2P55344 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.42□□□□□ -0.1
LIM2P55344 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.42□□□□□ -0.1
LIM2P55344 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
LIM2P55344 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.42□□□□□ -0.1
LIM2P55344 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 ACE3P-201ENST00000423435 1973 ntBASIC14.42□□□□□ -0.1
LIM2P55344 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.42□□□□□ -0.1
LIM2P55344 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.41□□□□□ -0.1
LIM2P55344 AC063926.3-201ENST00000624734 5658 ntBASIC14.41□□□□□ -0.1
LIM2P55344 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.41□□□□□ -0.1
LIM2P55344 KRT8P14-201ENST00000414254 1442 ntBASIC14.41□□□□□ -0.1
LIM2P55344 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
LIM2P55344 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.41□□□□□ -0.1
LIM2P55344 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.41□□□□□ -0.1
LIM2P55344 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
LIM2P55344 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.41□□□□□ -0.1
LIM2P55344 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
LIM2P55344 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
LIM2P55344 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.41□□□□□ -0.1
LIM2P55344 AL512384.1-201ENST00000406683 331 ntBASIC14.41□□□□□ -0.1
LIM2P55344 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.41□□□□□ -0.1
LIM2P55344 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.41□□□□□ -0.1
LIM2P55344 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 AC007389.4-201ENST00000454674 793 ntBASIC14.41□□□□□ -0.1
LIM2P55344 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.41□□□□□ -0.1
LIM2P55344 KRT18P25-201ENST00000508931 1278 ntBASIC14.41□□□□□ -0.1
LIM2P55344 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.41□□□□□ -0.1
LIM2P55344 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
LIM2P55344 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.41□□□□□ -0.1
LIM2P55344 TDH-203ENST00000531764 1110 ntBASIC14.41□□□□□ -0.1
LIM2P55344 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.41□□□□□ -0.1
LIM2P55344 MIR5189-201ENST00000577370 114 ntBASIC14.41□□□□□ -0.1
LIM2P55344 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.41□□□□□ -0.1
LIM2P55344 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.41□□□□□ -0.1
LIM2P55344 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC14.41□□□□□ -0.1
LIM2P55344 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.41□□□□□ -0.1
LIM2P55344 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.41□□□□□ -0.1
LIM2P55344 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.41□□□□□ -0.1
LIM2P55344 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 LILRP1-201ENST00000444199 1370 ntBASIC14.41□□□□□ -0.1
LIM2P55344 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.41□□□□□ -0.1
LIM2P55344 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.41□□□□□ -0.1
LIM2P55344 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
LIM2P55344 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
LIM2P55344 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.41□□□□□ -0.1
LIM2P55344 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.41□□□□□ -0.1
LIM2P55344 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
LIM2P55344 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 AC005912.2-201ENST00000619492 2400 ntBASIC14.41□□□□□ -0.1
LIM2P55344 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 MSTO2P-201ENST00000314835 1709 ntBASIC14.41□□□□□ -0.1
LIM2P55344 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LIM2P55344 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
LIM2P55344 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.4□□□□□ -0.1
LIM2P55344 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.4□□□□□ -0.1
LIM2P55344 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.4□□□□□ -0.1
LIM2P55344 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms