Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.79□□□□□ -0.04
LDLRP01130 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDLRP01130 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDLRP01130 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDLRP01130 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.79□□□□□ -0.04
LDLRP01130 AC112492.5-201ENST00000421897 457 ntBASIC14.79□□□□□ -0.04
LDLRP01130 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
LDLRP01130 DFFBP1-201ENST00000433250 979 ntBASIC14.79□□□□□ -0.04
LDLRP01130 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.79□□□□□ -0.04
LDLRP01130 NARF-206ENST00000457415 1668 ntTSL 5 BASIC14.79□□□□□ -0.04
LDLRP01130 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.79□□□□□ -0.04
LDLRP01130 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDLRP01130 AC011495.1-201ENST00000498085 584 ntBASIC14.79□□□□□ -0.04
LDLRP01130 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LDLRP01130 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.79□□□□□ -0.04
LDLRP01130 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.79□□□□□ -0.04
LDLRP01130 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.79□□□□□ -0.04
LDLRP01130 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
LDLRP01130 AC243562.2-201ENST00000561247 970 ntBASIC14.79□□□□□ -0.04
LDLRP01130 RAB43P1-201ENST00000561790 589 ntBASIC14.79□□□□□ -0.04
LDLRP01130 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.79□□□□□ -0.04
LDLRP01130 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDLRP01130 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDLRP01130 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDLRP01130 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.79□□□□□ -0.04
LDLRP01130 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.79□□□□□ -0.04
LDLRP01130 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.79□□□□□ -0.04
LDLRP01130 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.79□□□□□ -0.04
LDLRP01130 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.79□□□□□ -0.04
LDLRP01130 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
LDLRP01130 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.79□□□□□ -0.04
LDLRP01130 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.79□□□□□ -0.04
LDLRP01130 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.79□□□□□ -0.04
LDLRP01130 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
LDLRP01130 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LDLRP01130 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.78□□□□□ -0.04
LDLRP01130 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
LDLRP01130 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 INTS4P1-203ENST00000641008 3683 ntBASIC14.78□□□□□ -0.04
LDLRP01130 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 AC073439.1-201ENST00000624121 1774 ntBASIC14.78□□□□□ -0.04
LDLRP01130 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.78□□□□□ -0.04
LDLRP01130 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
LDLRP01130 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
LDLRP01130 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 AC041040.2-201ENST00000622926 2899 ntBASIC14.78□□□□□ -0.04
LDLRP01130 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
LDLRP01130 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.78□□□□□ -0.04
LDLRP01130 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.78□□□□□ -0.04
LDLRP01130 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.78□□□□□ -0.04
LDLRP01130 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.78□□□□□ -0.04
LDLRP01130 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.78□□□□□ -0.04
LDLRP01130 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 AC105233.2-201ENST00000523697 349 ntBASIC14.78□□□□□ -0.04
LDLRP01130 AF228730.5-201ENST00000530288 346 ntBASIC14.78□□□□□ -0.04
LDLRP01130 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.78□□□□□ -0.04
LDLRP01130 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.78□□□□□ -0.04
LDLRP01130 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC14.78□□□□□ -0.04
LDLRP01130 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.78□□□□□ -0.04
LDLRP01130 AL844908.2-201ENST00000609461 460 ntBASIC14.78□□□□□ -0.04
LDLRP01130 TEX28P1-201ENST00000613479 1221 ntBASIC14.78□□□□□ -0.04
LDLRP01130 TEX28P2-201ENST00000617764 1221 ntBASIC14.78□□□□□ -0.04
LDLRP01130 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.78□□□□□ -0.04
LDLRP01130 AC004840.1-201ENST00000636359 365 ntBASIC14.78□□□□□ -0.04
LDLRP01130 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
LDLRP01130 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.78□□□□□ -0.04
LDLRP01130 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.78□□□□□ -0.04
LDLRP01130 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
LDLRP01130 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.04
LDLRP01130 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDLRP01130 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.78□□□□□ -0.04
LDLRP01130 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LDLRP01130 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
LDLRP01130 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms