Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
RNF40O75150 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
RNF40O75150 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
RNF40O75150 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
RNF40O75150 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
RNF40O75150 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.52■□□□□ 0.24
RNF40O75150 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
RNF40O75150 AC097376.2-205ENST00000610159 5334 ntBASIC16.52■□□□□ 0.24
RNF40O75150 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
RNF40O75150 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RNF40O75150 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
RNF40O75150 AC126365.1-201ENST00000578585 1514 ntBASIC16.52■□□□□ 0.24
RNF40O75150 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
RNF40O75150 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
RNF40O75150 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
RNF40O75150 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
RNF40O75150 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
RNF40O75150 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.52■□□□□ 0.24
RNF40O75150 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.52■□□□□ 0.24
RNF40O75150 ARL4AP4-201ENST00000434170 518 ntBASIC16.52■□□□□ 0.24
RNF40O75150 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.52■□□□□ 0.24
RNF40O75150 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.52■□□□□ 0.24
RNF40O75150 TPRX2P-201ENST00000535362 881 ntBASIC16.52■□□□□ 0.24
RNF40O75150 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.52■□□□□ 0.24
RNF40O75150 SRD5A3P1-201ENST00000603021 949 ntBASIC16.52■□□□□ 0.24
RNF40O75150 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.52■□□□□ 0.24
RNF40O75150 AL162274.1-201ENST00000617191 1098 ntBASIC16.52■□□□□ 0.24
RNF40O75150 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.52■□□□□ 0.24
RNF40O75150 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.52■□□□□ 0.23
RNF40O75150 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC16.52■□□□□ 0.23
RNF40O75150 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
RNF40O75150 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
RNF40O75150 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RNF40O75150 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.52■□□□□ 0.23
RNF40O75150 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
RNF40O75150 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.52■□□□□ 0.23
RNF40O75150 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
RNF40O75150 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.23
RNF40O75150 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RNF40O75150 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
RNF40O75150 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.51■□□□□ 0.23
RNF40O75150 AC007326.2-201ENST00000624224 7579 ntBASIC16.51■□□□□ 0.23
RNF40O75150 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC16.51■□□□□ 0.23
RNF40O75150 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC16.51■□□□□ 0.23
RNF40O75150 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC16.51■□□□□ 0.23
RNF40O75150 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
RNF40O75150 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.51■□□□□ 0.23
RNF40O75150 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.51■□□□□ 0.23
RNF40O75150 SPDYE17-201ENST00000412399 783 ntBASIC16.51■□□□□ 0.23
RNF40O75150 ACA64.2-201ENST00000459014 129 ntBASIC16.51■□□□□ 0.23
RNF40O75150 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.51■□□□□ 0.23
RNF40O75150 SDHAP3-202ENST00000515467 728 ntBASIC16.51■□□□□ 0.23
RNF40O75150 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.51■□□□□ 0.23
RNF40O75150 AC004461.2-201ENST00000629517 803 ntBASIC16.51■□□□□ 0.23
RNF40O75150 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.51■□□□□ 0.23
RNF40O75150 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
RNF40O75150 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC16.51■□□□□ 0.23
RNF40O75150 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.51■□□□□ 0.23
RNF40O75150 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC16.51■□□□□ 0.23
RNF40O75150 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.51■□□□□ 0.23
RNF40O75150 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.51■□□□□ 0.23
RNF40O75150 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
RNF40O75150 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF40O75150 AC011477.6-201ENST00000604980 1927 ntBASIC16.51■□□□□ 0.23
RNF40O75150 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC16.51■□□□□ 0.23
RNF40O75150 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RNF40O75150 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RNF40O75150 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
RNF40O75150 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RNF40O75150 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.5■□□□□ 0.23
RNF40O75150 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.5■□□□□ 0.23
RNF40O75150 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.5■□□□□ 0.23
RNF40O75150 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RNF40O75150 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RNF40O75150 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RNF40O75150 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RNF40O75150 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
RNF40O75150 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms