Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
AP3B1O00203 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.39■□□□□ 0.05
AP3B1O00203 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
AP3B1O00203 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
AP3B1O00203 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
AP3B1O00203 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
AP3B1O00203 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
AP3B1O00203 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
AP3B1O00203 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
AP3B1O00203 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
AP3B1O00203 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
AP3B1O00203 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
AP3B1O00203 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
AP3B1O00203 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
AP3B1O00203 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
AP3B1O00203 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 AC018665.1-201ENST00000622927 1362 ntBASIC15.38■□□□□ 0.05
AP3B1O00203 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
AP3B1O00203 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
AP3B1O00203 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
AP3B1O00203 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.38■□□□□ 0.05
AP3B1O00203 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.38■□□□□ 0.05
AP3B1O00203 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
AP3B1O00203 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.38■□□□□ 0.05
AP3B1O00203 AC134915.1-201ENST00000426461 574 ntBASIC15.38■□□□□ 0.05
AP3B1O00203 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.38■□□□□ 0.05
AP3B1O00203 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.38■□□□□ 0.05
AP3B1O00203 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15.38■□□□□ 0.05
AP3B1O00203 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.38■□□□□ 0.05
AP3B1O00203 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.38■□□□□ 0.05
AP3B1O00203 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.38■□□□□ 0.05
AP3B1O00203 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.38■□□□□ 0.05
AP3B1O00203 AC023310.3-201ENST00000557027 670 ntBASIC15.38■□□□□ 0.05
AP3B1O00203 AC100756.1-201ENST00000562736 682 ntBASIC15.38■□□□□ 0.05
AP3B1O00203 AC138749.3-201ENST00000567691 622 ntBASIC15.38■□□□□ 0.05
AP3B1O00203 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.38■□□□□ 0.05
AP3B1O00203 AL390955.2-201ENST00000603032 514 ntBASIC15.38■□□□□ 0.05
AP3B1O00203 AC116165.1-201ENST00000611806 668 ntBASIC15.38■□□□□ 0.05
AP3B1O00203 AC009118.2-201ENST00000613275 655 ntBASIC15.38■□□□□ 0.05
AP3B1O00203 AL662799.1-202ENST00000614205 422 ntBASIC15.38■□□□□ 0.05
AP3B1O00203 AC007431.3-201ENST00000623221 587 ntBASIC15.38■□□□□ 0.05
AP3B1O00203 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.38■□□□□ 0.05
AP3B1O00203 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
AP3B1O00203 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
AP3B1O00203 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.38■□□□□ 0.05
AP3B1O00203 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
AP3B1O00203 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.38■□□□□ 0.05
AP3B1O00203 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
AP3B1O00203 LINC00552-201ENST00000625151 2579 ntBASIC15.37■□□□□ 0.05
AP3B1O00203 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
AP3B1O00203 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
AP3B1O00203 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.37■□□□□ 0.05
AP3B1O00203 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.37■□□□□ 0.05
AP3B1O00203 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
AP3B1O00203 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
AP3B1O00203 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.37■□□□□ 0.05
AP3B1O00203 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
AP3B1O00203 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.37■□□□□ 0.05
AP3B1O00203 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
AP3B1O00203 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
AP3B1O00203 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.37■□□□□ 0.05
AP3B1O00203 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
AP3B1O00203 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
AP3B1O00203 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
AP3B1O00203 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
AP3B1O00203 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
AP3B1O00203 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
AP3B1O00203 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
AP3B1O00203 SPDYE19P-201ENST00000338590 713 ntBASIC15.37■□□□□ 0.05
AP3B1O00203 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
AP3B1O00203 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.37■□□□□ 0.05
AP3B1O00203 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
AP3B1O00203 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.37■□□□□ 0.05
AP3B1O00203 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.37■□□□□ 0.05
AP3B1O00203 AL442647.2-201ENST00000429864 857 ntBASIC15.37■□□□□ 0.05
AP3B1O00203 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
AP3B1O00203 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.37■□□□□ 0.05
AP3B1O00203 AC093214.1-201ENST00000511688 1107 ntBASIC15.37■□□□□ 0.05
AP3B1O00203 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.37■□□□□ 0.05
AP3B1O00203 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.37■□□□□ 0.05
AP3B1O00203 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.37■□□□□ 0.05
AP3B1O00203 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
AP3B1O00203 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms