Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC28.5■■■□□ 2.15
SHROOM4Q9ULL8 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
SHROOM4Q9ULL8 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC28.5■■■□□ 2.15
SHROOM4Q9ULL8 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC28.5■■■□□ 2.15
SHROOM4Q9ULL8 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC28.5■■■□□ 2.15
SHROOM4Q9ULL8 IGLV3-15-201ENST00000518356 244 ntBASIC28.5■■■□□ 2.15
SHROOM4Q9ULL8 AC090857.1-201ENST00000527400 390 ntBASIC28.5■■■□□ 2.15
SHROOM4Q9ULL8 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
SHROOM4Q9ULL8 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC28.5■■■□□ 2.15
SHROOM4Q9ULL8 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
SHROOM4Q9ULL8 ZBTB45P1-201ENST00000452761 1456 ntBASIC28.5■■■□□ 2.15
SHROOM4Q9ULL8 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
SHROOM4Q9ULL8 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC28.5■■■□□ 2.15
SHROOM4Q9ULL8 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
SHROOM4Q9ULL8 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
SHROOM4Q9ULL8 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC28.5■■■□□ 2.15
SHROOM4Q9ULL8 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 RN7SKP214-201ENST00000364208 315 ntBASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 RPL5P21-201ENST00000404620 815 ntBASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 PUDPP3-201ENST00000445368 636 ntBASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 AC130709.1-201ENST00000484779 1212 ntBASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 AL022344.2-201ENST00000568976 968 ntBASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC28.49■■■□□ 2.15
SHROOM4Q9ULL8 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 AC112693.3-201ENST00000624819 1983 ntBASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 API5-202ENST00000420461 2009 ntTSL 2 BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 MVK-214ENST00000629016 1591 ntTSL 5 BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 AC007950.2-201ENST00000615045 2347 ntBASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC28.48■■■□□ 2.15
SHROOM4Q9ULL8 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 SERF2-206ENST00000409291 807 ntTSL 3 BASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 AC074138.1-201ENST00000611182 1303 ntBASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC28.47■■■□□ 2.15
SHROOM4Q9ULL8 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 AC007881.3-201ENST00000608897 607 ntBASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 C18orf15-201ENST00000623680 2534 ntBASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC28.46■■■□□ 2.15
SHROOM4Q9ULL8 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC28.46■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms