Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 CICP14-201ENST00000629111 2732 ntBASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 ACKR1-201ENST00000368121 1240 ntBASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 APOA1-205ENST00000375329 927 ntTSL 2 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 AL035633.1-201ENST00000406139 838 ntBASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 AC022137.2-201ENST00000503482 481 ntBASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 AC009486.1-201ENST00000569860 813 ntBASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 KSR1-207ENST00000578981 748 ntTSL 4 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 AC007686.3-201ENST00000619017 3487 ntBASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 PCDHA3-202ENST00000532566 4594 ntBASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 COCH-203ENST00000460581 2688 ntTSL 2 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 RPS15-201ENST00000233609 534 ntTSL 2 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 PGGT1BP2-201ENST00000398621 1028 ntBASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 LSM5-207ENST00000410044 687 ntTSL 3 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 EIF3FP3-201ENST00000434851 1086 ntBASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 PTPA-220ENST00000436883 532 ntTSL 4 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 INE1-201ENST00000456273 945 ntBASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 RPS15-205ENST00000586686 562 ntTSL 5 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 RPS15-208ENST00000591804 711 ntTSL 5 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 KRT8P35-201ENST00000483942 1338 ntBASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC19.48■□□□□ 0.71
SMC4Q9NTJ3 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SMC4Q9NTJ3 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
SMC4Q9NTJ3 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC19.47■□□□□ 0.71
SMC4Q9NTJ3 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMC4Q9NTJ3 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMC4Q9NTJ3 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
SMC4Q9NTJ3 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms