Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL12A1Q99715 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC12.95□□□□□ -0.34
COL12A1Q99715 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL12A1Q99715 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL12A1Q99715 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC12.95□□□□□ -0.34
COL12A1Q99715 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL12A1Q99715 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC12.95□□□□□ -0.34
COL12A1Q99715 OLA1P2-201ENST00000395519 1264 ntBASIC12.95□□□□□ -0.34
COL12A1Q99715 SOD2-205ENST00000444946 917 ntTSL 2 BASIC12.95□□□□□ -0.34
COL12A1Q99715 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC12.95□□□□□ -0.34
COL12A1Q99715 AC026434.2-201ENST00000506094 1078 ntBASIC12.95□□□□□ -0.34
COL12A1Q99715 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC12.95□□□□□ -0.34
COL12A1Q99715 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC12.95□□□□□ -0.34
COL12A1Q99715 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC12.95□□□□□ -0.34
COL12A1Q99715 AC080013.5-201ENST00000607044 679 ntBASIC12.95□□□□□ -0.34
COL12A1Q99715 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC12.95□□□□□ -0.34
COL12A1Q99715 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL12A1Q99715 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL12A1Q99715 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC12.95□□□□□ -0.34
COL12A1Q99715 CEP83-AS1-201ENST00000623122 2482 ntBASIC12.95□□□□□ -0.34
COL12A1Q99715 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL12A1Q99715 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC12.95□□□□□ -0.34
COL12A1Q99715 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL12A1Q99715 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC12.95□□□□□ -0.34
COL12A1Q99715 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC12.95□□□□□ -0.34
COL12A1Q99715 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
COL12A1Q99715 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC12.95□□□□□ -0.34
COL12A1Q99715 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL12A1Q99715 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL12A1Q99715 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC12.95□□□□□ -0.34
COL12A1Q99715 AC008741.2-201ENST00000612792 3115 ntBASIC12.94□□□□□ -0.34
COL12A1Q99715 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC12.94□□□□□ -0.34
COL12A1Q99715 HLA-K-203ENST00000430151 1046 ntBASIC12.94□□□□□ -0.34
COL12A1Q99715 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC12.94□□□□□ -0.34
COL12A1Q99715 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC12.94□□□□□ -0.34
COL12A1Q99715 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC12.94□□□□□ -0.34
COL12A1Q99715 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC12.94□□□□□ -0.34
COL12A1Q99715 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC12.94□□□□□ -0.34
COL12A1Q99715 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC12.94□□□□□ -0.34
COL12A1Q99715 AC002472.3-201ENST00000640124 621 ntBASIC12.94□□□□□ -0.34
COL12A1Q99715 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC12.94□□□□□ -0.34
COL12A1Q99715 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC12.94□□□□□ -0.34
COL12A1Q99715 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
COL12A1Q99715 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC12.94□□□□□ -0.34
COL12A1Q99715 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
COL12A1Q99715 MPI-203ENST00000535694 1523 ntTSL 2 BASIC12.94□□□□□ -0.34
COL12A1Q99715 NQO2-204ENST00000380454 851 ntTSL 2 BASIC12.94□□□□□ -0.34
COL12A1Q99715 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC12.94□□□□□ -0.34
COL12A1Q99715 TPT1P6-201ENST00000458298 514 ntBASIC12.94□□□□□ -0.34
COL12A1Q99715 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC12.94□□□□□ -0.34
COL12A1Q99715 AC138701.2-201ENST00000553634 226 ntBASIC12.94□□□□□ -0.34
COL12A1Q99715 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC12.94□□□□□ -0.34
COL12A1Q99715 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC12.94□□□□□ -0.34
COL12A1Q99715 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC12.94□□□□□ -0.34
COL12A1Q99715 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
COL12A1Q99715 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
COL12A1Q99715 AC084364.1-201ENST00000551967 1556 ntBASIC12.94□□□□□ -0.34
COL12A1Q99715 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC12.94□□□□□ -0.34
COL12A1Q99715 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC12.94□□□□□ -0.34
COL12A1Q99715 AC092850.2-201ENST00000623821 2697 ntBASIC12.94□□□□□ -0.34
COL12A1Q99715 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
COL12A1Q99715 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC12.94□□□□□ -0.34
COL12A1Q99715 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC12.94□□□□□ -0.34
COL12A1Q99715 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
COL12A1Q99715 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC12.94□□□□□ -0.34
COL12A1Q99715 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC12.94□□□□□ -0.34
COL12A1Q99715 PFN2-205ENST00000461868 613 ntTSL 2 BASIC12.94□□□□□ -0.34
COL12A1Q99715 AC090136.2-201ENST00000517809 420 ntBASIC12.94□□□□□ -0.34
COL12A1Q99715 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC12.94□□□□□ -0.34
COL12A1Q99715 AC100827.2-201ENST00000563214 1194 ntBASIC12.94□□□□□ -0.34
COL12A1Q99715 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
COL12A1Q99715 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 API5-208ENST00000531273 1868 ntTSL 2 BASIC12.94□□□□□ -0.34
COL12A1Q99715 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL12A1Q99715 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms