Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 AL355864.2-201ENST00000447420 863 ntBASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 CROCCP4-201ENST00000457096 498 ntBASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 USP32P1-208ENST00000506594 1164 ntBASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 AC009486.1-201ENST00000569860 813 ntBASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 AC133552.6-201ENST00000613406 534 ntBASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC14.8□□□□□ -0.04
CLIP3Q96DZ5 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms