Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 FAM21FP-201ENST00000426241 1131 ntBASIC14.17□□□□□ -0.14
BEST3Q8N1M1 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 AL583810.1-201ENST00000553344 1045 ntBASIC14.17□□□□□ -0.14
BEST3Q8N1M1 RHOXF1P1-202ENST00000635473 501 ntBASIC14.17□□□□□ -0.14
BEST3Q8N1M1 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 FAM45BP-202ENST00000592932 1624 ntBASIC14.16□□□□□ -0.14
BEST3Q8N1M1 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 KLF2P2-201ENST00000416807 1039 ntBASIC14.16□□□□□ -0.14
BEST3Q8N1M1 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 AC026954.1-201ENST00000429771 1293 ntBASIC14.16□□□□□ -0.14
BEST3Q8N1M1 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 AC079316.1-201ENST00000548397 411 ntBASIC14.16□□□□□ -0.14
BEST3Q8N1M1 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 TECR-220ENST00000600083 1204 ntTSL 2 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.16□□□□□ -0.14
BEST3Q8N1M1 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms