Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 CICP11-201ENST00000434745 2827 ntBASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 TTTY23B-201ENST00000442790 549 ntBASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 TDH-203ENST00000531764 1110 ntBASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 IGHV3-72-202ENST00000621503 303 ntBASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.1□□□□□ -0.15
NUP54Q7Z3B4 AP002414.2-201ENST00000591780 3365 ntBASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 BAATP1-201ENST00000412284 1225 ntBASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 GIMAP3P-201ENST00000495150 836 ntBASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 KRT18P25-201ENST00000508931 1278 ntBASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 AL035252.4-201ENST00000624174 288 ntBASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
NUP54Q7Z3B4 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms