Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCNA1P78396 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCNA1P78396 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCNA1P78396 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCNA1P78396 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCNA1P78396 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCNA1P78396 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC17.14■□□□□ 0.33
CCNA1P78396 IGF1-203ENST00000392904 761 ntTSL 5 BASIC17.14■□□□□ 0.33
CCNA1P78396 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC17.14■□□□□ 0.33
CCNA1P78396 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC17.14■□□□□ 0.33
CCNA1P78396 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CCNA1P78396 AC012044.1-201ENST00000603431 297 ntBASIC17.14■□□□□ 0.33
CCNA1P78396 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
CCNA1P78396 AC006453.1-201ENST00000636037 1257 ntBASIC17.14■□□□□ 0.33
CCNA1P78396 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCNA1P78396 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCNA1P78396 AC009090.5-201ENST00000624886 2285 ntBASIC17.14■□□□□ 0.33
CCNA1P78396 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCNA1P78396 AL008718.2-201ENST00000609206 1313 ntBASIC17.14■□□□□ 0.33
CCNA1P78396 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CCNA1P78396 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCNA1P78396 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
CCNA1P78396 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
CCNA1P78396 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC17.14■□□□□ 0.33
CCNA1P78396 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCNA1P78396 AC020910.5-201ENST00000623668 1865 ntBASIC17.14■□□□□ 0.33
CCNA1P78396 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CCNA1P78396 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CCNA1P78396 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.13■□□□□ 0.33
CCNA1P78396 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCNA1P78396 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCNA1P78396 AC105250.1-201ENST00000509378 2057 ntBASIC17.13■□□□□ 0.33
CCNA1P78396 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.13■□□□□ 0.33
CCNA1P78396 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC17.13■□□□□ 0.33
CCNA1P78396 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC17.13■□□□□ 0.33
CCNA1P78396 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 UFM1-202ENST00000379649 846 ntTSL 4 BASIC17.13■□□□□ 0.33
CCNA1P78396 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC17.13■□□□□ 0.33
CCNA1P78396 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 AC008267.1-201ENST00000474858 1069 ntBASIC17.13■□□□□ 0.33
CCNA1P78396 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC17.13■□□□□ 0.33
CCNA1P78396 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCNA1P78396 RTN3P1-201ENST00000536295 711 ntBASIC17.13■□□□□ 0.33
CCNA1P78396 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC17.13■□□□□ 0.33
CCNA1P78396 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC17.13■□□□□ 0.33
CCNA1P78396 MIR5572-201ENST00000583188 137 ntBASIC17.13■□□□□ 0.33
CCNA1P78396 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 IRF3-215ENST00000596822 823 ntTSL 3 BASIC17.13■□□□□ 0.33
CCNA1P78396 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC17.13■□□□□ 0.33
CCNA1P78396 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
CCNA1P78396 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CCNA1P78396 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CCNA1P78396 AL138725.1-201ENST00000407347 1314 ntBASIC17.13■□□□□ 0.33
CCNA1P78396 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.13■□□□□ 0.33
CCNA1P78396 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC17.13■□□□□ 0.33
CCNA1P78396 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.13■□□□□ 0.33
CCNA1P78396 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNA1P78396 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
CCNA1P78396 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNA1P78396 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNA1P78396 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CCNA1P78396 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC17.12■□□□□ 0.33
CCNA1P78396 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNA1P78396 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.12■□□□□ 0.33
CCNA1P78396 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.12■□□□□ 0.33
CCNA1P78396 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.12■□□□□ 0.33
CCNA1P78396 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNA1P78396 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC17.12■□□□□ 0.33
CCNA1P78396 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
CCNA1P78396 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNA1P78396 RN7SKP230-201ENST00000365642 335 ntBASIC17.12■□□□□ 0.33
CCNA1P78396 PDIA3P2-201ENST00000428073 158 ntBASIC17.12■□□□□ 0.33
CCNA1P78396 VDAC1P1-201ENST00000439229 848 ntBASIC17.12■□□□□ 0.33
CCNA1P78396 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC17.12■□□□□ 0.33
CCNA1P78396 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC17.12■□□□□ 0.33
CCNA1P78396 POU5F1P2-201ENST00000521750 823 ntBASIC17.12■□□□□ 0.33
CCNA1P78396 AC103988.2-201ENST00000561804 725 ntBASIC17.12■□□□□ 0.33
CCNA1P78396 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC17.12■□□□□ 0.33
CCNA1P78396 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNA1P78396 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC17.12■□□□□ 0.33
CCNA1P78396 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
CCNA1P78396 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNA1P78396 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.12■□□□□ 0.33
CCNA1P78396 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CCNA1P78396 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms