Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX3P48380 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.39□□□□□ -0.11
RFX3P48380 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX3P48380 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 PEG13-201ENST00000631594 5667 ntBASIC14.38□□□□□ -0.11
RFX3P48380 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
RFX3P48380 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
RFX3P48380 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX3P48380 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX3P48380 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
RFX3P48380 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 TOMM22P5-201ENST00000416399 439 ntBASIC14.38□□□□□ -0.11
RFX3P48380 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX3P48380 TSPY16P-201ENST00000449843 468 ntBASIC14.38□□□□□ -0.11
RFX3P48380 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.38□□□□□ -0.11
RFX3P48380 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.38□□□□□ -0.11
RFX3P48380 AC004790.1-201ENST00000612686 536 ntBASIC14.38□□□□□ -0.11
RFX3P48380 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
RFX3P48380 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.38□□□□□ -0.11
RFX3P48380 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.38□□□□□ -0.11
RFX3P48380 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX3P48380 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.38□□□□□ -0.11
RFX3P48380 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.38□□□□□ -0.11
RFX3P48380 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX3P48380 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.37□□□□□ -0.11
RFX3P48380 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
RFX3P48380 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.37□□□□□ -0.11
RFX3P48380 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
RFX3P48380 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
RFX3P48380 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.37□□□□□ -0.11
RFX3P48380 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
RFX3P48380 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
RFX3P48380 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
RFX3P48380 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
RFX3P48380 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.37□□□□□ -0.11
RFX3P48380 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.37□□□□□ -0.11
RFX3P48380 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.37□□□□□ -0.11
RFX3P48380 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.37□□□□□ -0.11
RFX3P48380 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.37□□□□□ -0.11
RFX3P48380 AC023310.3-201ENST00000557027 670 ntBASIC14.37□□□□□ -0.11
RFX3P48380 AC100756.1-201ENST00000562736 682 ntBASIC14.37□□□□□ -0.11
RFX3P48380 AC138749.3-201ENST00000567691 622 ntBASIC14.37□□□□□ -0.11
RFX3P48380 AC092337.1-201ENST00000568699 1129 ntBASIC14.37□□□□□ -0.11
RFX3P48380 AC036164.1-201ENST00000570544 333 ntBASIC14.37□□□□□ -0.11
RFX3P48380 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.37□□□□□ -0.11
RFX3P48380 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.37□□□□□ -0.11
RFX3P48380 AC025181.2-201ENST00000606994 802 ntBASIC14.37□□□□□ -0.11
RFX3P48380 AC004233.3-201ENST00000607794 1269 ntBASIC14.37□□□□□ -0.11
RFX3P48380 AC116165.1-201ENST00000611806 668 ntBASIC14.37□□□□□ -0.11
RFX3P48380 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.37□□□□□ -0.11
RFX3P48380 AJ011932.1-201ENST00000621707 465 ntBASIC14.37□□□□□ -0.11
RFX3P48380 TCAF2P1-201ENST00000291129 2421 ntBASIC14.37□□□□□ -0.11
RFX3P48380 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
RFX3P48380 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 AL359258.3-201ENST00000622910 2331 ntBASIC14.37□□□□□ -0.11
RFX3P48380 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
RFX3P48380 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
RFX3P48380 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms