Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 FAM86LP-201ENST00000478302 853 ntBASIC14.82□□□□□ -0.04
HNF4AP41235 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.82□□□□□ -0.04
HNF4AP41235 RRP7BP-205ENST00000566851 833 ntBASIC14.82□□□□□ -0.04
HNF4AP41235 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.82□□□□□ -0.04
HNF4AP41235 CHCHD2P3-201ENST00000603038 451 ntBASIC14.82□□□□□ -0.04
HNF4AP41235 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.82□□□□□ -0.04
HNF4AP41235 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.82□□□□□ -0.04
HNF4AP41235 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 SLC7A15P-201ENST00000424028 1363 ntBASIC14.82□□□□□ -0.04
HNF4AP41235 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.82□□□□□ -0.04
HNF4AP41235 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.82□□□□□ -0.04
HNF4AP41235 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.82□□□□□ -0.04
HNF4AP41235 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 FGD5P1-202ENST00000614866 2498 ntBASIC14.82□□□□□ -0.04
HNF4AP41235 AJ011931.1-201ENST00000618749 2492 ntBASIC14.82□□□□□ -0.04
HNF4AP41235 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.82□□□□□ -0.04
HNF4AP41235 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HNF4AP41235 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 SNX18-202ENST00000343017 3140 ntBASIC14.81□□□□□ -0.04
HNF4AP41235 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
HNF4AP41235 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
HNF4AP41235 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
HNF4AP41235 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
HNF4AP41235 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.81□□□□□ -0.04
HNF4AP41235 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.81□□□□□ -0.04
HNF4AP41235 DFFBP1-201ENST00000433250 979 ntBASIC14.81□□□□□ -0.04
HNF4AP41235 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.81□□□□□ -0.04
HNF4AP41235 AC055876.2-201ENST00000531834 546 ntBASIC14.81□□□□□ -0.04
HNF4AP41235 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.81□□□□□ -0.04
HNF4AP41235 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.81□□□□□ -0.04
HNF4AP41235 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.81□□□□□ -0.04
HNF4AP41235 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.81□□□□□ -0.04
HNF4AP41235 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.81□□□□□ -0.04
HNF4AP41235 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.81□□□□□ -0.04
HNF4AP41235 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
HNF4AP41235 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
HNF4AP41235 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
HNF4AP41235 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.81□□□□□ -0.04
HNF4AP41235 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HNF4AP41235 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.81□□□□□ -0.04
HNF4AP41235 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.81□□□□□ -0.04
HNF4AP41235 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.8□□□□□ -0.04
HNF4AP41235 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
HNF4AP41235 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.8□□□□□ -0.04
HNF4AP41235 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
HNF4AP41235 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.8□□□□□ -0.04
HNF4AP41235 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.8□□□□□ -0.04
HNF4AP41235 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.8□□□□□ -0.04
HNF4AP41235 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.8□□□□□ -0.04
HNF4AP41235 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.8□□□□□ -0.04
HNF4AP41235 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.8□□□□□ -0.04
HNF4AP41235 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.8□□□□□ -0.04
HNF4AP41235 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HNF4AP41235 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.8□□□□□ -0.04
HNF4AP41235 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.8□□□□□ -0.04
HNF4AP41235 RPL13AP25-201ENST00000484130 612 ntBASIC14.8□□□□□ -0.04
HNF4AP41235 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.8□□□□□ -0.04
HNF4AP41235 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms