Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PGGT1BP2-201ENST00000398621 1028 ntBASIC13.98□□□□□ -0.17
RFC3P40938 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.98□□□□□ -0.17
RFC3P40938 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.98□□□□□ -0.17
RFC3P40938 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13.98□□□□□ -0.17
RFC3P40938 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 FO681548.1-201ENST00000455617 1132 ntBASIC13.98□□□□□ -0.17
RFC3P40938 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13.98□□□□□ -0.17
RFC3P40938 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.98□□□□□ -0.17
RFC3P40938 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.98□□□□□ -0.17
RFC3P40938 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC13.98□□□□□ -0.17
RFC3P40938 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC13.98□□□□□ -0.17
RFC3P40938 AC025279.2-201ENST00000569730 653 ntBASIC13.98□□□□□ -0.17
RFC3P40938 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.98□□□□□ -0.17
RFC3P40938 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC13.98□□□□□ -0.17
RFC3P40938 AC138951.2-201ENST00000623455 1161 ntBASIC13.98□□□□□ -0.17
RFC3P40938 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.98□□□□□ -0.17
RFC3P40938 RHOXF1P1-202ENST00000635473 501 ntBASIC13.98□□□□□ -0.17
RFC3P40938 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
RFC3P40938 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.98□□□□□ -0.17
RFC3P40938 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC13.98□□□□□ -0.17
RFC3P40938 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.98□□□□□ -0.17
RFC3P40938 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC13.98□□□□□ -0.17
RFC3P40938 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
RFC3P40938 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFC3P40938 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.98□□□□□ -0.17
RFC3P40938 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC13.97□□□□□ -0.17
RFC3P40938 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC13.97□□□□□ -0.17
RFC3P40938 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
RFC3P40938 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
RFC3P40938 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
RFC3P40938 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC13.97□□□□□ -0.17
RFC3P40938 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC13.97□□□□□ -0.17
RFC3P40938 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.97□□□□□ -0.17
RFC3P40938 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC13.97□□□□□ -0.17
RFC3P40938 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
RFC3P40938 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
RFC3P40938 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC13.97□□□□□ -0.17
RFC3P40938 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.97□□□□□ -0.17
RFC3P40938 MDH2-205ENST00000461263 648 ntTSL 2 BASIC13.97□□□□□ -0.17
RFC3P40938 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
RFC3P40938 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.97□□□□□ -0.17
RFC3P40938 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.97□□□□□ -0.17
RFC3P40938 AC078819.1-201ENST00000547454 765 ntBASIC13.97□□□□□ -0.17
RFC3P40938 AC012085.1-201ENST00000548270 765 ntBASIC13.97□□□□□ -0.17
RFC3P40938 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.97□□□□□ -0.17
RFC3P40938 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC13.97□□□□□ -0.17
RFC3P40938 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC13.97□□□□□ -0.17
RFC3P40938 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.97□□□□□ -0.17
RFC3P40938 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC13.97□□□□□ -0.17
RFC3P40938 AC010328.2-201ENST00000597698 1111 ntBASIC13.97□□□□□ -0.17
RFC3P40938 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.97□□□□□ -0.17
RFC3P40938 SNX18-202ENST00000343017 3140 ntBASIC13.97□□□□□ -0.17
RFC3P40938 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC13.97□□□□□ -0.17
RFC3P40938 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC13.97□□□□□ -0.17
RFC3P40938 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
RFC3P40938 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.97□□□□□ -0.17
RFC3P40938 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC13.97□□□□□ -0.17
RFC3P40938 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC13.97□□□□□ -0.17
RFC3P40938 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFC3P40938 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC13.96□□□□□ -0.17
RFC3P40938 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RFC3P40938 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
RFC3P40938 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms