Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
SDC1P18827 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
SDC1P18827 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.5□□□□□ -0.09
SDC1P18827 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SDC1P18827 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SDC1P18827 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
SDC1P18827 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.49□□□□□ -0.09
SDC1P18827 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SDC1P18827 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SDC1P18827 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SDC1P18827 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SDC1P18827 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.49□□□□□ -0.09
SDC1P18827 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.49□□□□□ -0.09
SDC1P18827 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
SDC1P18827 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.49□□□□□ -0.09
SDC1P18827 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SDC1P18827 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SDC1P18827 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.49□□□□□ -0.09
SDC1P18827 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.49□□□□□ -0.09
SDC1P18827 RN7SL399P-201ENST00000471648 279 ntBASIC14.49□□□□□ -0.09
SDC1P18827 TPRX2P-201ENST00000535362 881 ntBASIC14.49□□□□□ -0.09
SDC1P18827 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.49□□□□□ -0.09
SDC1P18827 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.49□□□□□ -0.09
SDC1P18827 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.49□□□□□ -0.09
SDC1P18827 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
SDC1P18827 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.49□□□□□ -0.09
SDC1P18827 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.49□□□□□ -0.09
SDC1P18827 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.49□□□□□ -0.09
SDC1P18827 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.49□□□□□ -0.09
SDC1P18827 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
SDC1P18827 AC023090.2-201ENST00000625182 2110 ntBASIC14.49□□□□□ -0.09
SDC1P18827 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
SDC1P18827 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
SDC1P18827 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SDC1P18827 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
SDC1P18827 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
SDC1P18827 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SDC1P18827 AC117489.1-201ENST00000625169 3217 ntBASIC14.49□□□□□ -0.09
SDC1P18827 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SDC1P18827 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.48□□□□□ -0.09
SDC1P18827 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.48□□□□□ -0.09
SDC1P18827 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
SDC1P18827 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.48□□□□□ -0.09
SDC1P18827 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.48□□□□□ -0.09
SDC1P18827 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
SDC1P18827 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.48□□□□□ -0.09
SDC1P18827 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.48□□□□□ -0.09
SDC1P18827 AL645937.2-201ENST00000396808 931 ntBASIC14.48□□□□□ -0.09
SDC1P18827 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.48□□□□□ -0.09
SDC1P18827 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.48□□□□□ -0.09
SDC1P18827 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.48□□□□□ -0.09
SDC1P18827 DOC2GP-202ENST00000514950 1163 ntBASIC14.48□□□□□ -0.09
SDC1P18827 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.48□□□□□ -0.09
SDC1P18827 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.48□□□□□ -0.09
SDC1P18827 AC106028.4-201ENST00000614509 607 ntBASIC14.48□□□□□ -0.09
SDC1P18827 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.48□□□□□ -0.09
SDC1P18827 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.48□□□□□ -0.09
SDC1P18827 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
SDC1P18827 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
SDC1P18827 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.48□□□□□ -0.09
SDC1P18827 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.48□□□□□ -0.09
SDC1P18827 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SDC1P18827 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
SDC1P18827 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.47□□□□□ -0.09
SDC1P18827 AC018665.1-201ENST00000622927 1362 ntBASIC14.47□□□□□ -0.09
SDC1P18827 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.47□□□□□ -0.09
SDC1P18827 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
SDC1P18827 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
SDC1P18827 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
SDC1P18827 PNMT-202ENST00000394246 821 ntTSL 2 BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms