Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
COL6A3P12111 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A3P12111 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A3P12111 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A3P12111 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
COL6A3P12111 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A3P12111 AC009517.1-201ENST00000454750 570 ntBASIC15.3■□□□□ 0.04
COL6A3P12111 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A3P12111 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A3P12111 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A3P12111 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC15.29■□□□□ 0.04
COL6A3P12111 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
COL6A3P12111 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
COL6A3P12111 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
COL6A3P12111 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A3P12111 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A3P12111 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC15.29■□□□□ 0.04
COL6A3P12111 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A3P12111 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A3P12111 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A3P12111 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A3P12111 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A3P12111 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A3P12111 AC112504.1-201ENST00000623415 1841 ntBASIC15.29■□□□□ 0.04
COL6A3P12111 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A3P12111 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A3P12111 AL136172.1-201ENST00000598590 1394 ntBASIC15.29■□□□□ 0.04
COL6A3P12111 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A3P12111 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
COL6A3P12111 KRT18P4-201ENST00000422599 1288 ntBASIC15.29■□□□□ 0.04
COL6A3P12111 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A3P12111 AC008494.1-201ENST00000497612 796 ntBASIC15.29■□□□□ 0.04
COL6A3P12111 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A3P12111 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC15.29■□□□□ 0.04
COL6A3P12111 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC15.29■□□□□ 0.04
COL6A3P12111 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC15.29■□□□□ 0.04
COL6A3P12111 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC15.29■□□□□ 0.04
COL6A3P12111 AC005274.1-201ENST00000623460 802 ntBASIC15.29■□□□□ 0.04
COL6A3P12111 AC138627.1-201ENST00000641127 1257 ntBASIC15.29■□□□□ 0.04
COL6A3P12111 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A3P12111 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A3P12111 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A3P12111 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A3P12111 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A3P12111 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A3P12111 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A3P12111 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
COL6A3P12111 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
COL6A3P12111 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
COL6A3P12111 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC15.28■□□□□ 0.04
COL6A3P12111 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC15.28■□□□□ 0.04
COL6A3P12111 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
COL6A3P12111 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC15.28■□□□□ 0.04
COL6A3P12111 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A3P12111 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A3P12111 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
COL6A3P12111 AC092127.1-201ENST00000567093 3455 ntBASIC15.28■□□□□ 0.04
COL6A3P12111 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A3P12111 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
COL6A3P12111 RN7SL128P-201ENST00000467883 305 ntBASIC15.28■□□□□ 0.04
COL6A3P12111 SNRPD2P2-201ENST00000473818 333 ntBASIC15.28■□□□□ 0.04
COL6A3P12111 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC15.28■□□□□ 0.04
COL6A3P12111 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC15.28■□□□□ 0.04
COL6A3P12111 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.28■□□□□ 0.04
COL6A3P12111 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC15.28■□□□□ 0.04
COL6A3P12111 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A3P12111 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.28■□□□□ 0.04
COL6A3P12111 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A3P12111 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A3P12111 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A3P12111 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A3P12111 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A3P12111 RN7SKP230-201ENST00000365642 335 ntBASIC15.28■□□□□ 0.04
COL6A3P12111 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC15.28■□□□□ 0.04
COL6A3P12111 RN7SL33P-201ENST00000462543 342 ntBASIC15.28■□□□□ 0.04
COL6A3P12111 ACY3-202ENST00000529256 933 ntTSL 3 BASIC15.28■□□□□ 0.04
COL6A3P12111 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC15.28■□□□□ 0.04
COL6A3P12111 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.28■□□□□ 0.04
COL6A3P12111 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A3P12111 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
COL6A3P12111 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL6A3P12111 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL6A3P12111 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL6A3P12111 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL6A3P12111 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.27■□□□□ 0.04
COL6A3P12111 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL6A3P12111 HNRNPA1P59-201ENST00000430583 918 ntBASIC15.27■□□□□ 0.04
COL6A3P12111 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC15.27■□□□□ 0.04
COL6A3P12111 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC15.27■□□□□ 0.04
COL6A3P12111 RN7SL523P-201ENST00000484401 298 ntBASIC15.27■□□□□ 0.04
COL6A3P12111 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL6A3P12111 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL6A3P12111 LUC7L3-223ENST00000625349 408 ntTSL 2 BASIC15.27■□□□□ 0.04
COL6A3P12111 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
COL6A3P12111 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.27■□□□□ 0.04
COL6A3P12111 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL6A3P12111 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.03
COL6A3P12111 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
COL6A3P12111 AC011270.2-201ENST00000624293 2550 ntBASIC15.27■□□□□ 0.03
COL6A3P12111 CRCT1-201ENST00000368790 700 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms