Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC14.7□□□□□ -0.06
HOXC4P09017 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 NKG7-204ENST00000595217 816 ntTSL 2 BASIC14.7□□□□□ -0.06
HOXC4P09017 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.7□□□□□ -0.06
HOXC4P09017 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.7□□□□□ -0.06
HOXC4P09017 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.7□□□□□ -0.06
HOXC4P09017 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.7□□□□□ -0.06
HOXC4P09017 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
HOXC4P09017 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
HOXC4P09017 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
HOXC4P09017 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXC4P09017 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
HOXC4P09017 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.69□□□□□ -0.06
HOXC4P09017 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.69□□□□□ -0.06
HOXC4P09017 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.69□□□□□ -0.06
HOXC4P09017 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
HOXC4P09017 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 AC006058.4-201ENST00000624016 1670 ntBASIC14.69□□□□□ -0.06
HOXC4P09017 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.69□□□□□ -0.06
HOXC4P09017 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
HOXC4P09017 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC14.69□□□□□ -0.06
HOXC4P09017 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXC4P09017 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 BX284668.4-201ENST00000453917 508 ntBASIC14.69□□□□□ -0.06
HOXC4P09017 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC14.69□□□□□ -0.06
HOXC4P09017 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC14.69□□□□□ -0.06
HOXC4P09017 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.69□□□□□ -0.06
HOXC4P09017 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXC4P09017 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC14.69□□□□□ -0.06
HOXC4P09017 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
HOXC4P09017 AC005324.6-201ENST00000587972 613 ntBASIC14.69□□□□□ -0.06
HOXC4P09017 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 AC022748.3-201ENST00000621828 275 ntBASIC14.69□□□□□ -0.06
HOXC4P09017 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
HOXC4P09017 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXC4P09017 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.69□□□□□ -0.06
HOXC4P09017 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
HOXC4P09017 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXC4P09017 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 ACE3P-201ENST00000423435 1973 ntBASIC14.69□□□□□ -0.06
HOXC4P09017 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXC4P09017 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.68□□□□□ -0.06
HOXC4P09017 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 HNRNPA1P32-201ENST00000396326 963 ntBASIC14.68□□□□□ -0.06
HOXC4P09017 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC14.68□□□□□ -0.06
HOXC4P09017 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.68□□□□□ -0.06
HOXC4P09017 SCARNA20.5-201ENST00000516991 142 ntBASIC14.68□□□□□ -0.06
HOXC4P09017 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
HOXC4P09017 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC14.68□□□□□ -0.06
HOXC4P09017 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC14.68□□□□□ -0.06
HOXC4P09017 MIR4783-201ENST00000580343 82 ntBASIC14.68□□□□□ -0.06
HOXC4P09017 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 AC020914.3-201ENST00000594712 304 ntBASIC14.68□□□□□ -0.06
HOXC4P09017 BNIP3P13-201ENST00000599968 566 ntBASIC14.68□□□□□ -0.06
HOXC4P09017 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.68□□□□□ -0.06
HOXC4P09017 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC14.68□□□□□ -0.06
HOXC4P09017 AL139099.5-201ENST00000635274 300 ntBASIC14.68□□□□□ -0.06
HOXC4P09017 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.68□□□□□ -0.06
HOXC4P09017 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXC4P09017 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms