Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC16.27■□□□□ 0.2
SIX2Q9NPC8 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
SIX2Q9NPC8 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SIX2Q9NPC8 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SIX2Q9NPC8 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SIX2Q9NPC8 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.27■□□□□ 0.2
SIX2Q9NPC8 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.27■□□□□ 0.2
SIX2Q9NPC8 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SIX2Q9NPC8 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.2
SIX2Q9NPC8 AC114812.1-204ENST00000449669 728 ntBASIC16.27■□□□□ 0.2
SIX2Q9NPC8 AC022616.1-201ENST00000518688 554 ntBASIC16.27■□□□□ 0.2
SIX2Q9NPC8 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.27■□□□□ 0.2
SIX2Q9NPC8 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.27■□□□□ 0.2
SIX2Q9NPC8 AC004466.1-201ENST00000599515 1080 ntBASIC16.27■□□□□ 0.2
SIX2Q9NPC8 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.27■□□□□ 0.2
SIX2Q9NPC8 WFDC1-204ENST00000613603 549 ntBASIC16.27■□□□□ 0.2
SIX2Q9NPC8 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SIX2Q9NPC8 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SIX2Q9NPC8 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SIX2Q9NPC8 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
SIX2Q9NPC8 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SIX2Q9NPC8 INTS4P1-203ENST00000641008 3683 ntBASIC16.27■□□□□ 0.19
SIX2Q9NPC8 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SIX2Q9NPC8 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.27■□□□□ 0.19
SIX2Q9NPC8 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.27■□□□□ 0.19
SIX2Q9NPC8 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SIX2Q9NPC8 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SIX2Q9NPC8 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 AC055811.4-201ENST00000624039 1754 ntBASIC16.26■□□□□ 0.19
SIX2Q9NPC8 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 AC087499.6-201ENST00000411576 835 ntBASIC16.26■□□□□ 0.19
SIX2Q9NPC8 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 AC133539.2-201ENST00000604757 467 ntBASIC16.26■□□□□ 0.19
SIX2Q9NPC8 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SIX2Q9NPC8 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.25■□□□□ 0.19
SIX2Q9NPC8 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 PAM16-204ENST00000571941 674 ntTSL 3 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.25■□□□□ 0.19
SIX2Q9NPC8 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms