Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 AC006486.2-201ENST00000624246 2199 ntBASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 AC020907.1-201ENST00000616460 1350 ntBASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 FAM86HP-204ENST00000513466 959 ntBASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 AC007326.2-201ENST00000624224 7579 ntBASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRAIPQ9BWF2 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 AC126755.1-201ENST00000525846 6405 ntBASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 AL158070.2-201ENST00000623713 1621 ntBASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 OLR1-203ENST00000432556 950 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 PFN2-215ENST00000497148 743 ntTSL 4 BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 MIR6787-201ENST00000616675 61 ntBASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 AC009542.2-202ENST00000619004 1067 ntBASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAIPQ9BWF2 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAIPQ9BWF2 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms