Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
PTCHD1Q96NR3 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
PTCHD1Q96NR3 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.39□□□□□ -0.11
PTCHD1Q96NR3 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
PTCHD1Q96NR3 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.39□□□□□ -0.11
PTCHD1Q96NR3 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PTCHD1Q96NR3 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PTCHD1Q96NR3 TNRC18P2-201ENST00000417666 2714 ntBASIC14.39□□□□□ -0.11
PTCHD1Q96NR3 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.39□□□□□ -0.11
PTCHD1Q96NR3 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
PTCHD1Q96NR3 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PTCHD1Q96NR3 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.39□□□□□ -0.11
PTCHD1Q96NR3 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PTCHD1Q96NR3 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
PTCHD1Q96NR3 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
PTCHD1Q96NR3 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 AC023024.2-201ENST00000623561 1993 ntBASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 AC018665.1-201ENST00000622927 1362 ntBASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 AC126365.1-201ENST00000578585 1514 ntBASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 GHSR-202ENST00000427970 912 ntBASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 KRT43P-201ENST00000434019 910 ntBASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 AP001889.1-201ENST00000525414 633 ntBASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 CFL1-212ENST00000531413 636 ntTSL 3 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
PTCHD1Q96NR3 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 KRT8P44-201ENST00000441609 1350 ntBASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 RNU1-114P-201ENST00000365297 166 ntBASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 AC005229.1-201ENST00000392885 409 ntBASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 AC104457.1-201ENST00000401024 814 ntBASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 KLF2P2-201ENST00000416807 1039 ntBASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 GPR53P-205ENST00000457298 1084 ntBASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.37□□□□□ -0.11
PTCHD1Q96NR3 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms