Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
CPNE4Q96A23 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
CPNE4Q96A23 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CPNE4Q96A23 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC13.72□□□□□ -0.21
CPNE4Q96A23 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CPNE4Q96A23 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CPNE4Q96A23 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.72□□□□□ -0.21
CPNE4Q96A23 AC012508.2-201ENST00000567613 1472 ntBASIC13.72□□□□□ -0.21
CPNE4Q96A23 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CPNE4Q96A23 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.72□□□□□ -0.21
CPNE4Q96A23 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CPNE4Q96A23 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CPNE4Q96A23 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CPNE4Q96A23 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CPNE4Q96A23 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.72□□□□□ -0.21
CPNE4Q96A23 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CPNE4Q96A23 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CPNE4Q96A23 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CPNE4Q96A23 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC13.72□□□□□ -0.21
CPNE4Q96A23 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC13.72□□□□□ -0.21
CPNE4Q96A23 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CPNE4Q96A23 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CPNE4Q96A23 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC13.72□□□□□ -0.21
CPNE4Q96A23 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 AC134312.5-201ENST00000568031 1313 ntBASIC13.71□□□□□ -0.21
CPNE4Q96A23 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 RPS15-201ENST00000233609 534 ntTSL 2 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 AC005229.1-201ENST00000392885 409 ntBASIC13.71□□□□□ -0.21
CPNE4Q96A23 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 NAA50-208ENST00000497255 789 ntTSL 5 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 AC106886.1-201ENST00000568660 600 ntBASIC13.71□□□□□ -0.21
CPNE4Q96A23 RPS15-205ENST00000586686 562 ntTSL 5 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 RPS15-208ENST00000591804 711 ntTSL 5 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CPNE4Q96A23 AL022328.1-201ENST00000610050 478 ntBASIC13.71□□□□□ -0.21
CPNE4Q96A23 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 RPSAP52-203ENST00000622976 1023 ntBASIC13.71□□□□□ -0.21
CPNE4Q96A23 PRSS30P-206ENST00000641773 873 ntBASIC13.71□□□□□ -0.21
CPNE4Q96A23 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.71□□□□□ -0.21
CPNE4Q96A23 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
CPNE4Q96A23 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.71□□□□□ -0.22
CPNE4Q96A23 OR2I1P-210ENST00000642037 4691 ntBASIC13.71□□□□□ -0.22
CPNE4Q96A23 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
CPNE4Q96A23 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.71□□□□□ -0.22
CPNE4Q96A23 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CPNE4Q96A23 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CPNE4Q96A23 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CPNE4Q96A23 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.22
CPNE4Q96A23 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CPNE4Q96A23 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
CPNE4Q96A23 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.22
CPNE4Q96A23 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.71□□□□□ -0.22
CPNE4Q96A23 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CPNE4Q96A23 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CPNE4Q96A23 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC13.7□□□□□ -0.22
CPNE4Q96A23 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CPNE4Q96A23 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
CPNE4Q96A23 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.7□□□□□ -0.22
CPNE4Q96A23 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CPNE4Q96A23 AL137784.3-201ENST00000623858 2288 ntBASIC13.7□□□□□ -0.22
CPNE4Q96A23 KRT8P35-201ENST00000483942 1338 ntBASIC13.7□□□□□ -0.22
CPNE4Q96A23 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CPNE4Q96A23 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CPNE4Q96A23 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CPNE4Q96A23 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.7□□□□□ -0.22
CPNE4Q96A23 AC126177.1-201ENST00000547829 2218 ntBASIC13.7□□□□□ -0.22
CPNE4Q96A23 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CPNE4Q96A23 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC13.7□□□□□ -0.22
CPNE4Q96A23 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CPNE4Q96A23 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CPNE4Q96A23 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CPNE4Q96A23 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CPNE4Q96A23 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CPNE4Q96A23 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms